Transcript 4289 | MetamORF

Transcript

ID CARD

MetamORF ID

4289

ENSMUST00000211731

Name

Gm5905-201

Strand

Biotype

processed_pseudogene

Start-end positions

141177885-141178464

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:546015

Aliases

EG546015,
ENSMUSG00000110275, Gm5905, MGI:3647422,
NCBI:546015, OFF:Gm5905

Chr 7

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
843810	108	CTG ...	LGL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Pseudogene sORF	B_cell
4288	33	TTG ...	LTL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Pseudogene sORF	Skin_tumor
842988	174	GTG ...	VTP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Pseudogene sORF	B_cell
842866	102	TTG ...	LLQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Pseudogene sORF	B_cell
1254480	36	CTG ...	LLT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Pseudogene sORF	E14
844637	66	CTG ...	LAK ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Pseudogene sORF	B_cell, R1E
840116	81	ATG ...	MDS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Pseudogene sORF	B_cell
842499	99	TTG ...	LQN ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Pseudogene sORF	B_cell
841537	213	ATG ...	MPV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Pseudogene sORF	B_cell

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