Transcript 427177

Transcript

ID CARD

MetamORF ID

427177

ENSMUST00000212949

Name

Ddx39-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

83715272-83726892

CDS Start-stop positions

83719391-83723141

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:68278

Aliases

2610307C23Rik,
BAT1, Ddx39, Ddx39a,
DDXL, ENSMUSG00000005481, MGI:1915528,
NCBI:68278, OFF:Ddx39a, URH49

Chr 8

ORFs

111 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1794275	84	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
1262797	78	AGG ...	RAW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1266437	219	ATT ...	IKK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
429044	177	ATG ...	MRR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell
1071675	138	CTG ...	LQQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil
427299	171	GTG ...	VGT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell
79488	204	GTG ...	VVL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1072496	66	CTG ...	LAT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, Neutrophil, NSC
430571	174	GTG ...	VVG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell
1691069	63	GTG ...	VFL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF
430689	78	ATG ...	MGC ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
428986	153	TTG ...	LRF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
429662	45	ATG ...	MMP ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
431754	54	TTG ...	LSS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1265396	96	ACG ...	TLH ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
429527	66	GTG ...	VPG ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
428625	63	ATG ...	MLW ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
81443	240	GTG ...	VFF ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
430236	102	GTG ...	VYS ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
1263747	42	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
430225	51	ATG ...	MKM ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
431660	39	TTG ...	LEA ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
1261396	96	AGG ...	RHP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
80341	72	CTG ...	LGW ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1521623	57	CTG ...	LQQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	NSC
79306	126	ATG ...	MSV ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
78427	225	CTG ...	LPS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Spleen_B_cell
81839	240	TTG ...	LDY ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1266036	180	AAG ...	KKD ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
429350	42	ATG ...	MSP ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
79476	255	GTG ...	VEN ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
754203	39	ATG ...	MSA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
755709	36	CTG ...	LCN ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC
431575	75	GTG ...	VYD ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
431780	114	ATG ...	MKM ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
427811	177	GTG ...	VFV ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
5270	45	TTG ...	LSS ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
1263815	48	ATA ...	IPA ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
430521	69	TTG ...	LSE ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1071720	111	GTG ...	VKH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, Neutrophil
427176	141	ATG ...	MWK ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
430358	75	GTG ...	VFV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, Neutrophil, NSC, Spleen_B_cell
1260744	72	AGG ...	RPD ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
428767	96	CTG ...	LVA ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
82108	126	CTG ...	LGM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell
430017	141	CTG ...	LLP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
80401	111	CTG ...	LCQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell
1327494	129	CTG ...	LGK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
430868	60	TTG ...	LYR ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
430815	111	TTG ...	LLL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
430655	48	CTG ...	LCS ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
1261075	33	AGG ...	RHG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1581129	195	CTG ...	LEG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
80356	93	GTG ...	VQR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1071303	141	GTG ...	VRS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, Neutrophil
79511	75	CTG ...	LAQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1071033	150	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, Neutrophil
428360	165	TTG ...	LSP ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1261939	75	ATC ...	ILC ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
429283	30	CTG ...	LQE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
1261170	33	ATT ...	IHR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
79649	60	GTG ...	VEQ ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1263243	60	ACG ...	TSS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
81756	45	GTG ...	VAL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
427872	162	GTG ...	VSP ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
430972	108	TTG ...	LLS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
428437	60	TTG ...	LWW ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
1264953	120	AAG ...	KLK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
429798	57	ATG ...	MSK ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
428643	99	GTG ...	VLV ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
80638	114	GTG ...	VVI ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
427864	69	GTG ...	VLA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell
1072419	120	CTG ...	LRN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil
429074	42	GTG ...	VRR ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
427397	132	ATG ...	MNF ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
429691	42	ATG ...	MPK ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
80615	54	CTG ...	LCL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1261588	156	AAG ...	KLT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1263508	99	AAG ...	KSV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1261858	117	AAG ...	KPE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1266062	66	ATT ...	ISQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
431406	87	TTG ...	LVP ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1261175	81	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1263265	93	ATC ...	ICL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
79355	168	CTG ...	LFS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
78441	93	ATG ...	MSC ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1265780	153	ATC ...	ILA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1264108	114	AAG ...	KDS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
427410	201	GTG ...	VLK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell
429109	108	ATG ...	MKS ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1261810	99	ACG ...	TRP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
431508	198	TTG ...	LKK ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell
1326202	159	GTG ...	VII ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1263895	39	ATC ...	IAI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1265733	78	AGG ...	RIL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
5252	99	CTG ...	LSS ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
5065	87	TTG ...	LAE ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
429612	93	CTG ...	LHG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
80279	159	GTG ...	VPW ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
81635	48	TTG ...	LCW ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
80739	111	GTG ...	VIF ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
429807	186	GTG ...	VGL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Spleen_B_cell
1262540	132	AGG ...	RSL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
429193	171	GTG ...	VDD ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1266262	30	AGG ...	RTQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
5186	108	TTG ...	LWT ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
430104	117	ATG ...	MMK ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5
430986	45	GTG ...	VPH ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
427729	180	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Spleen_B_cell
431644	147	CTG ...	LHG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell
429852	42	ATG ...	MTC ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, Spleen_B_cell, v6-5

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