Transcript 42195 | MetamORF

Transcript

ID CARD

MetamORF ID

42195

ENSMUST00000114510

Name

Gls-202

Strand

Biotype

protein_coding

Start-end positions

52184104-52233232

CDS Start-stop positions

52187648-52232992

CDS Relative positions

Sequences

Transcript sequence

TGA ...

Genome browsers

UCSC

Gene

NCBI:14660

Aliases

6330442B14,
AI314027, B230365M23Rik, ENSMUSG00000026103,
Gls, MGI:95752, NCBI:14660,
OFF:Gls

Chr 1

ORFs

53 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
122234	57	ATG ...	MTW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
356464	39	ATG ...	MYI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
940156	57	AAG ...	KIN ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1134449	69	TTG ...	LLI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
353875	72	ATG ...	MQL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC
953422	165	AGG ...	RGV ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
783602	33	CTG ...	LIC ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF
450265	48	TTG ...	LTR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
361917	39	TTG ...	LFL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
456208	174	CTG ...	LAA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	B_cell, E14, MEF
777765	30	ATG ...	MRV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
410102	45	CTG ...	LVK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
119512	258	CTG ...	LRD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
113746	102	ATG ...	MKV ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, v6-5
155346	36	TTG ...	LIL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
752000	207	GTG ...	VRS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	B_cell
406695	33	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
463546	267	CTG ...	LRD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
321662	42	GTG ...	VKE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1189486	45	ACG ...	TPQ ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
494309	87	TTG ...	LTR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
493185	69	GTG ...	VLR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
129899	78	CTG ...	LVM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
327455	30	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
295445	48	TTG ...	LQK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF
42194	258	CTG ...	LCN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	CDS sORF	3T3, B_cell, Spleen_B_cell, Testis
359547	63	CTG ...	LLM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
145211	66	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
296503	66	ATG ...	MVV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
705975	192	CTG ...	LQA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
146735	72	ATG ...	MNM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1618203	33	CTG ...	LSQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
813192	96	TTG ...	LQK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF
144055	273	CTG ...	LAW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
349056	36	CTG ...	LNE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
141786	96	GTG ...	VLK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, v6-5
385640	72	GTG ...	VYG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
997913	66	CTG ...	LII ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF
141031	111	ATG ...	MSY ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, v6-5
774440	45	TTG ...	LDH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
213786	45	CTG ...	LSM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
494782	141	CTG ...	LTL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, v6-5
458090	81	GTG ...	VRD ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, E14, MEF
116744	33	ATG ...	MKM ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF
898875	156	AGG ...	RGV ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
312003	132	TTG ...	LAA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	sORF Upstream	B_cell, MEF
300188	63	GTG ...	VVS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
97798	111	CTG ...	LGP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF Upstream	E14, MEF
141896	150	TTG ...	LSF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, v6-5
151405	87	TTG ...	LQK ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
817867	84	TTG ...	LIL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
898882	42	ATC ...	IFL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
127099	51	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

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