Transcript 421308

Transcript

ID CARD

MetamORF ID

421308

ENSMUST00000063838

Name

Fam49b-201

Strand

Biotype

protein_coding

Start-end positions

63929097-64060448

CDS Start-stop positions

63931616-63956672

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:223601

Aliases

0910001A06Rik,
AW122079, Cyrib, ENSMUSG00000022378,
Fam49b, MGI:1923520, NCBI:223601,
OFF:Cyrib

Chr 15

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1180810	66	AGG ...	RTR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	E14
948752	294	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
1181215	111	ATA ...	IEG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
691604	48	GTG ...	VMQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil
363921	48	TTG ...	LQR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, v6-5
472850	186	CTG ...	LLL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14, Neutrophil, Spleen_B_cell
472529	180	CTG ...	LSL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Neutrophil, Spleen_B_cell
788699	117	ATG ...	MMR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell
1407675	273	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	CDS sORF	Liver
32826	165	ATG ...	MIF ...	Ribo-seq	ATG		7	sORFs_org_Mouse	CDS sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, v6-5
948535	219	GTG ...	VCA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
355586	66	ATG ...	MQK ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Neutrophil, v6-5
471003	33	GTG ...	VMQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
355349	42	CTG ...	LPY ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Neutrophil, Spleen_B_cell
473014	105	GTG ...	VCA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Neutrophil, Spleen_B_cell
359164	54	ATG ...	MNW ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Neutrophil
1184100	105	ATT ...	ICS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
32546	48	TTG ...	LQR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, v6-5
359347	30	ATG ...	MTS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Neutrophil
1183215	258	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
366117	30	ATG ...	MLS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, v6-5
472525	144	CTG ...	LRR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Neutrophil, Spleen_B_cell
32993	180	ATG ...	MER ...	Ribo-seq	ATG		5	sORFs_org_Mouse	CDS sORF	B_cell, Brain, E14, MEF, Neutrophil
1183696	45	ATT ...	ICS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
367125	54	ATG ...	MTT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, v6-5
421307	60	AGG ...	RTK ...	Ribo-seq	AGG		2	sORFs_org_Mouse	sORF Upstream	C2C12, E14
1044933	45	ATG ...	MQQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil
358980	45	ATG ...	MPS ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
472508	126	CTG ...	LPR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
366475	126	ATG ...	MQK ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Neutrophil, v6-5
471090	39	CTG ...	LLE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
1183305	45	AGG ...	RSS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
355720	69	GTG ...	VGC ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, NSC, v6-5
31815	54	ATG ...	MTT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, v6-5
472761	183	CTG ...	LLS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Neutrophil, Spleen_B_cell
947926	42	CTG ...	LAE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	E14
948011	300	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
949257	300	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
365790	81	TTG ...	LSR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, v6-5
1184833	48	ATA ...	IEG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
471342	30	ATG ...	MQQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
365938	78	GTG ...	VYA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Neutrophil, v6-5
948332	48	TTG ...	LSR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
358458	45	ATG ...	MRS ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Neutrophil, v6-5
473624	57	GTG ...	VHR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
790350	114	ATG ...	MRL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell

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