Transcript 419777

Transcript

ID CARD

MetamORF ID

419777

ENSMUST00000093140

Name

Anapc11-202

Strand

Biotype

protein_coding

Start-end positions

120598532-120605776

CDS Start-stop positions

120599260-120605426

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:66156

Aliases

1110011I19Rik,
Anapc11, ENSMUSG00000025135, MGI:1913406,
NCBI:66156, OFF:Anapc11, R75218

Chr 11

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
449398	129	GTG ...	VCA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil
18661	72	GTG ...	VMT ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, NSC, v6-5
1294305	30	AGG ...	RPW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
311668	93	GTG ...	VGV ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF, Neutrophil
17875	42	ATG ...	MLE ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC, NSC, v6-5
17218	69	ATG ...	MTA ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, NSC, v6-5
19078	75	CTG ...	LVM ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, NSC, v6-5
309223	45	CTG ...	LTS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil
91663	39	TTG ...	LEW ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, v6-5
1079263	156	CTG ...	LGA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil
419776	45	ATA ...	ISL ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, E14
933601	132	ATG ...	MRT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
930762	114	GTG ...	VRS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	BMDC, MEF, Neutrophil
447429	45	GTG ...	VGP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil
1080267	111	GTG ...	VQR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil
1598914	30	ATG ...	MLS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
1080292	99	GTG ...	VRV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil
975350	75	TTG ...	LVV ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil
657995	63	GTG ...	VTV ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, v6-5
447770	30	TTG ...	LFL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil

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