Transcript 419347

Transcript

ID CARD

MetamORF ID

419347

ENSMUST00000134585

Name

Cbx1-204

Strand

Biotype

nonsense_mediated_decay

Start-end positions

96789137-96808149

CDS Start-stop positions

96800808-96802826

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:12412

Aliases

Cbx,
Cbx-rs2, Cbx1, E430007M08Rik,
ENSMUSG00000018666, HP1B, Hp1beta,
M31, MGI:105369, MOD1,
NCBI:12412, OFF:Cbx1

Chr 11

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
309354	69	TTG ...	LPG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
8569	39	TTG ...	LEL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain
18564	78	GTG ...	VSP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Brain, MEF
774730	75	CTG ...	LTW ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, E14, MEF, NSC, v6-5
774647	69	TTG ...	LEP ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	CDS NMD sORF	B_cell, Brain
770162	204	TTG ...	LLC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain
310012	33	TTG ...	LGA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, MEF
774510	117	GTG ...	VPD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	B_cell
453959	105	CTG ...	LRY ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF Upstream	B_cell, Brain
453745	129	CTG ...	LSF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain
646451	42	TTG ...	LIG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, MEF
1124810	81	ATG ...	MRL ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Brain, E14, Glioma, Liver, MEF, MESC, NSC, v6-5
419346	126	AAG ...	KKK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	C2C12
449745	57	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
1595910	30	TTG ...	LSR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
773275	192	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain
305641	30	GTG ...	VPT ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Brain, E14, MEF, v6-5
419543	192	AGG ...	RLF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	C2C12
1528570	75	CTG ...	LVF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
447926	78	GTG ...	VEK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF
772753	195	TTG ...	LLV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain
774357	201	CTG ...	LCL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain
90819	117	GTG ...	VAT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell, Brain
19112	93	CTG ...	LGA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	B_cell, Brain
449697	39	GTG ...	VEY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain
453486	99	ATG ...	MRQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
447880	81	GTG ...	VVE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, Brain, MEF
772518	183	GTG ...	VRT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, MEF
453934	30	CTG ...	LTP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF
446055	63	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
1079684	123	CTG ...	LVP ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, v6-5
643912	60	ATG ...	MWW ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS NMD Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
445674	132	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain
1125366	108	GTG ...	VLC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, MEF, v6-5
452472	51	CTG ...	LKI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
773581	63	CTG ...	LPR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, MEF, NSC, v6-5
453791	141	CTG ...	LTL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, MEF
1123132	30	TTG ...	LSY ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, MEF, NSC, v6-5
770352	84	CTG ...	LMR ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, E14, MEF, NSC, v6-5
1125641	48	ATG ...	MSS ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, MEF, NSC, v6-5
449110	117	GTG ...	VEE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF

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