Transcript 418833

Transcript

ID CARD

MetamORF ID

418833

ENSMUST00000150176

Name

Vmp1-207

Strand

Biotype

processed_transcript

Start-end positions

86585269-86586881

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:75909

Aliases

3110098I04Rik,
4930579A11Rik, AI787464, ENSMUSG00000018171,
MGI:1923159, mir-21a, NCBI:75909,
ni-2, OFF:Vmp1, Tango5,
Tmem49, Vmp1

Chr 11

ORFs

8 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
90898	108	GTG ...	VVA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
312364	81	TTG ...	LQW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
418832	33	ATC ...	ITE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	C2C12
418878	150	AAG ...	KPF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
91875	96	GTG ...	VCY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
17934	111	CTG ...	LVV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
303285	96	TTG ...	LRS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
303630	63	TTG ...	LSC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC

Export data