Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

41585

ID

ENSMUST00000096246

Name

Ganab-201

Strand

+

Biotype

protein_coding

Start-end positions

8898090-8916663

CDS Start-stop positions

8898122-8915734

CDS Relative positions

-

Sequences

Transcript sequence

AGG ...

Gene

ID

NCBI:14376

Aliases

AU042638,
ENSMUSG00000071650, G2an, Ganab,
GluII, MGI:1097667, mKIAA0088,
NCBI:14376, OFF:Ganab


Chr 19

ORFs

126 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1203002 33

CTG ...

LCS ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1158117 63

CTG ...

LVS ...

Ribo-seq
CTG strong 2 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
MEF, v6-5
721776 99

GTG ...

VDR ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
1204816 168

ATC ...

ITT ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
488117 63

CTG ...

LCI ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Neutrophil,
Spleen_B_cell, v6-5
963193 135

ATA ...

IEA ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1157866 60

CTG ...

LYR ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
401988 204

CTG ...

LVP ...

Ribo-seq
CTG 12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, NSC,
R1E, Spleen_B_cell, v6-5
489928 120

ATG ...

MSF ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, Spleen_B_cell
489754 66

ATG ...

MLC ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
Neutrophil, Spleen_B_cell, v6-5
724546 42

ATG ...

MNR ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
v6-5
408414 51

ATG ...

MLL ...

Ribo-seq
ATG 12 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, NSC, Spleen_B_cell,
v6-5
489046 60

CTG ...

LVY ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Liver,
MEF, NSC, Spleen_B_cell,
v6-5
1201646 153

ATC ...

IRV ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
408765 141

GTG ...

VMH ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, Neutrophil,
v6-5
858551 96

ATG ...

MLM ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
1159334 45

GTG ...

VSQ ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
858872 57

ATG ...

MTF ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, Liver,
Neutrophil
489263 123

GTG ...

VMS ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
Spleen_B_cell
1050740 30

CTG ...

LGG ...

Ribo-seq
CTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Neutrophil
1201895 138

ATC ...

ITT ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
960790 96

ATG ...

MQS ...

Ribo-seq
ATG moderate 6 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, E14, Glioma,
Liver, MEF, MESC,
v6-5
92248 150

ATG ...

MSF ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, NSC
1201762 174

AGG ...

RLM ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1204207 42

ACG ...

TIL ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1202086 72

AGG ...

RAL ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
858584 102

TTG ...

LNM ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
92015 207

ATG ...

MRL ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
NSC, v6-5
410470 132

TTG ...

LIY ...

Ribo-seq
TTG 13 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
NSC, R1E, Spleen_B_cell,
v6-5
402082 177

ATG ...

MRL ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
Spleen_B_cell, v6-5
43539 276

CTG ...

LQG ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil, Testis
1722415 60

CTG ...

LTP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
405641 96

TTG ...

LGR ...

Ribo-seq
TTG moderate 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
v6-5
725659 147

ATG ...

MAV ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
v6-5
1007087 30

TTG ...

LVL ...

Ribo-seq
TTG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF
43209 114

GTG ...

VMR ...

Ribo-seq
GTG 13 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, MEF,
R1E, Spleen_B_cell, Testis,
v6-5
858949 90

ATG ...

MAS ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver
406467 48

CTG ...

LLR ...

Ribo-seq
CTG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, MEF,
NSC, Spleen_B_cell, v6-5
718729 54

CTG ...

LKA ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver, NSC
1205011 177

ATC ...

IET ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
410822 57

ATG ...

MKS ...

Ribo-seq
ATG 12 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Glioma, Liver,
MEF, MESC, R1E,
Spleen_B_cell, v6-5
491000 174

TTG ...

LMI ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, NSC, Spleen_B_cell,
v6-5
487605 168

ATG ...

MFW ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, NSC,
Spleen_B_cell
488509 141

ATG ...

MIT ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
Spleen_B_cell
719435 78

ATG ...

MHS ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
v6-5
410498 147

CTG ...

LLR ...

Ribo-seq
CTG 15 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, NSC, R1E,
Spleen_B_cell, v6-5
725828 126

ATG ...

MLM ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver
410975 138

ATG ...

MHS ...

Ribo-seq
ATG 11 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Glioma, Liver,
MEF, MESC, Neutrophil,
v6-5
961418 66

ATT ...

ILC ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
488525 69

GTG ...

VPT ...

Ribo-seq
GTG weak 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF, NSC, Spleen_B_cell
725172 63

TTG ...

LST ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver, NSC
410668 201

CTG ...

LCS ...

Ribo-seq
CTG 14 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, NSC, R1E,
Spleen_B_cell, v6-5
43272 111

ATG ...

MRV ...

Ribo-seq
ATG 15 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Glioma,
Liver, MEF, MESC,
R1E, Spleen_B_cell, Testis,
v6-5
407735 63

TTG ...

LVK ...

Ribo-seq
TTG strong 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
Spleen_B_cell, v6-5
960977 60

GTG ...

VSA ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC, MEF, v6-5
409502 153

GTG ...

VMS ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
NSC, Spleen_B_cell
1205656 129

ATA ...

IYP ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
963341 234

ATC ...

ITR ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1200801 93

AGG ...

RGQ ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
409378 120

CTG ...

LYR ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, Neutrophil,
v6-5
726127 111

ATG ...

MLG ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, Neutrophil, v6-5
1157783 75

ATG ...

MGS ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
491498 201

CTG ...

LMF ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
NSC, Spleen_B_cell, v6-5
725468 120

ATG ...

MAS ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver
1158780 42

TTG ...

LGP ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
491131 219

CTG ...

LVP ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, NSC, Spleen_B_cell,
v6-5
1458097 36

GTG ...

VAE ...

Ribo-seq
GTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, NSC
1633618 30

CTG ...

LAV ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
410560 144

CTG ...

LRL ...

Ribo-seq
CTG 16 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, NSC, R1E,
Spleen_B_cell, v6-5
727314 105

ATG ...

MSS ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
Liver, v6-5
727230 108

CTG ...

LGP ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Liver,
Neutrophil, v6-5
488044 171

CTG ...

LMF ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
Spleen_B_cell
963611 129

ATA ...

IPR ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1457150 48

GTG ...

VSR ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, NSC
410410 150

ATG ...

MLL ...

Ribo-seq
ATG 16 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, NSC, R1E,
Spleen_B_cell, v6-5
409697 207

CTG ...

LCL ...

Ribo-seq
CTG 15 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, NSC, R1E,
Spleen_B_cell, v6-5
488262 45

CTG ...

LRL ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Liver, MEF, Spleen_B_cell
408130 102

CTG ...

LCS ...

Ribo-seq
CTG 16 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, NSC, R1E,
Spleen_B_cell, v6-5
405672 54

GTG ...

VPC ...

Ribo-seq
GTG moderate 11 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Liver,
MEF, R1E, Spleen_B_cell,
v6-5
859101 45

ATG ...

MEP ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
1202500 45

AAG ...

KPP ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
727087 75

ATG ...

MEA ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Neutrophil,
NSC, v6-5
1204563 99

ACG ...

TEC ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1204465 183

ATC ...

IRV ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
408874 213

ATG ...

MGL ...

Ribo-seq
ATG 15 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Glioma,
Liver, MEF, MESC,
NSC, R1E, Spleen_B_cell,
v6-5
488010 144

TTG ...

LMI ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, NSC, Spleen_B_cell
727177 198

ATG ...

MFW ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, NSC,
v6-5
41584 108

CTG ...

LCL ...

Ribo-seq
CTG 17 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, NSC, R1E,
Spleen_B_cell, Testis, v6-5
963607 66

ACG ...

TIL ...

Ribo-seq
ACG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
92136 141

CTG ...

LWI ...

Ribo-seq
CTG 14 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, MEF,
R1E, Spleen_B_cell, v6-5
960339 204

ATC ...

ITR ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
491462 84

CTG ...

LCI ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Neutrophil,
Spleen_B_cell, v6-5
962404 84

ATG ...

MPC ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, v6-5
804269 33

TTG ...

LIY ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Liver, MEF,
R1E
490956 87

ATG ...

MLC ...

Ribo-seq
ATG 9 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
Glioma, Liver, MEF,
MESC, Neutrophil, NSC,
Spleen_B_cell, v6-5
961830 48

CTG ...

LKV ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF
1204050 78

ATC ...

IET ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
488838 90

TTG ...

LCA ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, NSC,
Spleen_B_cell
492187 171

ATG ...

MIT ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
NSC, Spleen_B_cell, v6-5
1200659 45

ATA ...

IPS ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
42361 36

TTG ...

LCW ...

Ribo-seq
TTG weak 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, Liver,
MEF, Neutrophil, Testis
726856 75

CTG ...

LVY ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, NSC
722508 42

CTG ...

LCG ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, MEF
961400 114

ATA ...

IPR ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1204932 204

AGG ...

RLM ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
720996 81

GTG ...

VMH ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, v6-5
407248 84

TTG ...

LIT ...

Ribo-seq
TTG weak 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, v6-5
406050 36

ATG ...

MCM ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Glioma, Liver, MEF,
MESC
489156 30

TTG ...

LRH ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell
489557 129

ATG ...

MWV ...

Ribo-seq
ATG weak 6 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Glioma, Liver, MEF,
MESC, NSC, Spleen_B_cell
405273 132

ATG ...

MAV ...

Ribo-seq
ATG 11 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
NSC, Spleen_B_cell, v6-5
1204746 69

ATA ...

ICL ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
490326 54

ATG ...

MEA ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Neutrophil, Spleen_B_cell,
v6-5
490870 30

CTG ...

LSG ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
859425 93

CTG ...

LMA ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
721935 42

ATG ...

MPT ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF
41609 114

ATG ...

MGL ...

Ribo-seq
ATG 17 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
43545 75

CTG ...

LAA ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell,
Testis, v6-5
489640 123

GTG ...

VAS ...

Ribo-seq
GTG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
NSC, Spleen_B_cell
488908 66

CTG ...

LGR ...

Ribo-seq
CTG strong 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, Liver,
MEF, Spleen_B_cell, v6-5
725959 123

CTG ...

LMA ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver
1205660 57

CTG ...

LRA ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, NSC
1205532 90

AGG ...

RSI ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
410213 144

TTG ...

LLW ...

Ribo-seq
TTG 13 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, MEF,
R1E, Spleen_B_cell, v6-5
726595 132

TTG ...

LNM ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver
1720764 30

ATG ...

MGS ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5