Transcript 415388

Transcript

ID CARD

MetamORF ID

415388

ENSMUST00000182393

Name

Prrc2c-206

Strand

Biotype

protein_coding

Start-end positions

162671788-162705192

CDS Start-stop positions

162673607-

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:226562

Aliases

1810043M20Rik,
9630039I18Rik, A630006J20, Bat2d,
Bat2d1, Bat2l2, E130112L15Rik,
ENSMUSG00000040225, MGI:1913754, mKIAA1096,
NCBI:226562, OFF:Prrc2c, Prrc2c,
Prrc3

Chr 1

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
415387	111	ATG ...	MMA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	C2C12
960270	90	AAG ...	KGS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	BMDC
935241	84	AGG ...	RPA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	BMDC
645547	33	ATG ...	MTI ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	R1E
463297	219	CTG ...	LLI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	R1E
451634	225	GTG ...	VRC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	BMDC
464871	162	ATG ...	MES ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	BMDC
934269	117	AGG ...	RNI ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	BMDC
932014	105	ACG ...	TRW ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	sORF	BMDC
931228	57	AAG ...	KKT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	sORF	BMDC
961778	117	ATA ...	INL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF	BMDC
529118	105	CTG ...	LVS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	BMDC
677060	30	GTG ...	VEH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	BMDC, R1E

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