Transcript 415109

Transcript

ID CARD

MetamORF ID

415109

ENSMUST00000205156

Name

Emp1-206

Strand

Biotype

protein_coding

Start-end positions

135362545-135383173

CDS Start-stop positions

135377211-135381140

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:13730

Aliases

Emp1,
ENSMUSG00000030208, I-8-09, MGI:107941,
NCBI:13730, OFF:Emp1, TMP

Chr 6

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
581768	45	TTG ...	LPL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
415367	30	AGG ...	RAL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
415492	114	ATT ...	ILY ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12
579025	90	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
581418	87	TTG ...	LEC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
587527	99	CTG ...	LVS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
415654	90	TTG ...	LWS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, C2C12, E14, MEF
415236	39	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, E14, MEF
3423	78	TTG ...	LPL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
3364	72	CTG ...	LPL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, C2C12, E14, MEF
579508	66	CTG ...	LVS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1688195	30	TTG ...	LLA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1095489	219	CTG ...	LKR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, v6-5
577119	57	TTG ...	LWS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
587109	234	GTG ...	VVA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, MEF
415108	75	CTG ...	LKR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, MEF
415531	36	ATC ...	ICR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
415263	177	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	C2C12
415414	198	CTG ...	LLY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	C2C12
2746	63	CTG ...	LDG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, MEF
415711	147	ATT ...	ILY ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12

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