Transcript 414186

Transcript

ID CARD

MetamORF ID

414186

ENSMUST00000039939

Name

Szrd1-201

Strand

Biotype

processed_transcript

Start-end positions

141113001-141139775

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:213491

Aliases

1110022I03,
D4Ertd22e, ENSMUSG00000040842, MGI:1098672,
NCBI:213491, OFF:Szrd1, Szrd1

Chr 4

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
151627	66	CTG ...	LTY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
155991	171	ATG ...	MQA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
155785	57	TTG ...	LHC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
1426717	69	ATG ...	MFA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
553666	57	GTG ...	VIR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
825463	66	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
898957	120	ACG ...	TIA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
548783	39	TTG ...	LEK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1228330	189	CTG ...	LGG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
61156	249	GTG ...	VVS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, Spleen_B_cell, v6-5
58280	48	ATG ...	MRR ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12, E14, MEF
154313	84	TTG ...	LSR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1229515	117	ATA ...	IAF ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
826429	36	CTG ...	LWQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
823393	54	CTG ...	LPW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
825684	84	TTG ...	LGE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
548325	150	GTG ...	VVS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
149967	90	CTG ...	LDL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
145930	126	ATG ...	MVC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1654900	36	CTG ...	LVQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
546269	42	TTG ...	LGP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
151304	36	ATG ...	MGR ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
899600	39	ATC ...	ISS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
824540	63	CTG ...	LDG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
826431	69	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
822678	39	CTG ...	LLW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1783359	45	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
515665	60	CTG ...	LGG ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, NSC, Spleen_B_cell, v6-5
58855	36	CTG ...	LRA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF

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