Transcript 41403 | MetamORF

Transcript

ID CARD

MetamORF ID

41403

ENSMUST00000156961

Name

Cdca5-203

Strand

Biotype

processed_transcript

Start-end positions

6085751-6091777

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:67849

Aliases

2610036L13Rik,
AL024086, AW536684, C85404,
Cdca5, ENSMUSG00000024791, MGI:1915099,
NCBI:67849, OFF:Cdca5

Chr 19

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
488485	45	CTG ...	LTT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
1159647	186	CTG ...	LTL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
1157904	234	CTG ...	LVL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
43718	255	GTG ...	VCS ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1158576	48	TTG ...	LCL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
721009	72	CTG ...	LDK ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, R1E, v6-5
720211	57	GTG ...	VAM ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, R1E, v6-5
41481	198	GTG ...	VCS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, Neutrophil, R1E, Testis, v6-5
41846	153	TTG ...	LVP ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, Neutrophil, R1E, Testis, v6-5
722674	105	CTG ...	LQR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, R1E, v6-5
803717	63	GTG ...	VKE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, R1E, v6-5
1158138	195	ATG ...	MLS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
43376	276	TTG ...	LPG ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, Neutrophil, R1E, v6-5
1869039	36	ATG ...	MRA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1157244	192	TTG ...	LSL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
488142	60	TTG ...	LAL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
1157459	240	GTG ...	VSL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
723993	39	ATG ...	MLN ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, R1E, v6-5
489331	33	CTG ...	LES ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
1158545	96	GTG ...	VPQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
490386	78	CTG ...	LAA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
488038	54	TTG ...	LRD ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
41402	129	TTG ...	LVP ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, R1E, Testis, v6-5
1157692	102	TTG ...	LVV ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
1158622	180	CTG ...	LEK ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
43365	162	TTG ...	LVP ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
721037	219	TTG ...	LPG ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, Neutrophil, R1E, v6-5
1160368	72	ATG ...	MRA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	R1E, v6-5
487972	30	TTG ...	LKL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, R1E, v6-5
43185	210	TTG ...	LVP ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, Neutrophil, R1E, Testis, v6-5
1157269	57	GTG ...	VFK ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
721100	36	CTG ...	LNL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, MEF, R1E, v6-5
41733	105	TTG ...	LVP ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, Neutrophil, R1E, Testis, v6-5
43701	120	GTG ...	VKE ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
719762	33	ATG ...	MST ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, R1E, v6-5
43502	186	TTG ...	LVP ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, E14, MEF, Neutrophil, R1E, Testis, v6-5

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