Transcript 41393 | MetamORF

Transcript

ID CARD

MetamORF ID

41393

ENSMUST00000133175

Name

Zfand5-202

Strand

Biotype

retained_intron

Start-end positions

21276040-21280971

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:22682

Aliases

2310057A04Rik,
5830475F03Rik, AA415485, ENSMUSG00000024750,
MGI:1278334, NCBI:22682, OFF:Zfand5,
Za20d2, Zfand5, Zfp216

Chr 19

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
42895	51	CTG ...	LFA ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
41658	39	ATG ...	MWK ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, Testis, v6-5
42123	126	TTG ...	LFC ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, Testis, v6-5
14346	81	ATG ...	MGI ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
961377	144	CTG ...	LTS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
42701	144	CTG ...	LCS ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
806008	183	ATG ...	MLI ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, v6-5
1634717	30	ATG ...	MWK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
405315	45	CTG ...	LPM ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver, MEF, v6-5
42516	45	GTG ...	VFC ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, Testis, v6-5
724279	33	CTG ...	LHL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, NSC
960981	87	AAG ...	KKI ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
407954	36	TTG ...	LLQ ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, v6-5
962153	120	ATT ...	ITK ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
42374	63	ATG ...	MEC ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, Testis, v6-5
14461	90	GTG ...	VAF ...	Ribo-seq	GTG	strong	9	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
401817	60	GTG ...	VVP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, NSC

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