Transcript 413873

Transcript

ID CARD

MetamORF ID

413873

ENSMUST00000150262

Name

Tpm2-205

Strand

Biotype

processed_transcript

Start-end positions

43514711-43523438

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:22004

Aliases

ENSMUSG00000028464,
MGI:98810, NCBI:22004, OFF:Tpm2,
Tpm-2, Tpm2, Trop-2

Chr 4

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
870	54	GTG ...	VEI ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
1178173	42	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1886805	117	CTG ...	LNR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1178107	75	GTG ...	VAR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
414127	54	CTG ...	LEG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	C2C12, R1E
413872	60	AAG ...	KYK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
1081012	63	CTG ...	LVI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
1176321	60	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1315	78	TTG ...	LAS ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
1886233	126	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1652883	84	TTG ...	LDR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
1178264	42	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1228780	33	AAG ...	KIC ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1082094	63	CTG ...	LAT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
1081139	51	TTG ...	LQK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
414234	45	AGG ...	RTN ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	C2C12
544666	36	TTG ...	LDQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
1226094	57	ATC ...	ILE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14

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