Transcript 41291 | MetamORF

Transcript

ID CARD

MetamORF ID

41291

ENSMUST00000010807

Name

Fads1-201

Strand

Biotype

protein_coding

Start-end positions

10182888-10196870

CDS Start-stop positions

10183052-10194922

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:76267

Aliases

0710001O03Rik,
A930006B21Rik, AI317215, DSD,
ENSMUSG00000010663, Fads1, MGI:1923517,
NCBI:76267, OFF:Fads1

Chr 19

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
43421	144	TTG ...	LEL ...	Ribo-seq	TTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Testis, v6-5
407002	42	CTG ...	LVE ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, v6-5
409823	114	GTG ...	VQY ...	Ribo-seq	GTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, NSC, R1E, v6-5
403472	63	CTG ...	LQR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, NSC, v6-5
859312	126	TTG ...	LLW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver
859710	57	TTG ...	LES ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC
403474	33	CTG ...	LVQ ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, NSC, v6-5
404345	294	GTG ...	VRC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver
401668	42	TTG ...	LIT ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, NSC, Spleen_B_cell
408226	162	TTG ...	LGG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, NSC
410915	174	ATG ...	MWL ...	Ribo-seq	ATG		13	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, NSC, R1E, v6-5
858743	51	TTG ...	LES ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC
406903	30	ATG ...	MNS ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
403597	42	ATG ...	MPA ...	Ribo-seq	ATG	weak	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC
858536	180	CTG ...	LPR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
859448	96	CTG ...	LAR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF
1204692	93	ACG ...	TTG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1201552	57	ATA ...	ISP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
405245	48	CTG ...	LVC ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
981384	57	GTG ...	VVY ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, NSC, v6-5
981730	114	CTG ...	LDA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, NSC
406531	51	ATG ...	MES ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, NSC, v6-5
43028	120	ATG ...	MAR ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, C2C12, E14, Liver, NSC, Testis
408939	39	TTG ...	LSG ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, v6-5
408023	33	TTG ...	LWH ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, NSC
41438	30	TTG ...	LWF ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, Testis, v6-5
409414	99	TTG ...	LIT ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, NSC
42382	90	ATG ...	MPS ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, NSC, Testis
403099	30	GTG ...	VQY ...	Ribo-seq	GTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, NSC
1203748	54	AAG ...	KQL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
409979	93	TTG ...	LWF ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, NSC
407546	60	TTG ...	LEL ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, NSC
1204533	114	ATA ...	ISP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
404409	90	ATG ...	MWL ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, NSC
92017	168	CTG ...	LPG ...	Ribo-seq	CTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, NSC, R1E, v6-5
401912	60	TTG ...	LGT ...	Ribo-seq	TTG	strong	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, NSC, R1E, v6-5
402077	84	CTG ...	LPG ...	Ribo-seq	CTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, NSC
405454	33	CTG ...	LMN ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF
405313	42	TTG ...	LAP ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, v6-5
409926	153	CTG ...	LDA ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, v6-5
963394	96	ATC ...	ITT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
405169	39	GTG ...	VEP ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, v6-5
41290	66	ATG ...	MTL ...	Ribo-seq	ATG	moderate	15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5
403238	39	GTG ...	VGD ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5

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