Transcript 411849

Transcript

ID CARD

MetamORF ID

411849

ENSMUST00000186985

Name

Fn1-209

Strand

Biotype

nonsense_mediated_decay

Start-end positions

71598360-71602376

CDS Start-stop positions

71600530-

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:14268

Aliases

E330027I09,
ENSMUSG00000026193, Fn, Fn-1,
Fn1, MGI:95566, NCBI:14268,
OFF:Fn1

Chr 1

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
722452	96	GTG ...	VAT ...	Ribo-seq	GTG		7	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
419481	78	ATC ...	INL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	C2C12
419078	186	ATC ...	ITI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	C2C12
413014	81	ATA ...	IRS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	NMD sORF	C2C12
1146377	171	CTG ...	LTT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
1153905	93	GTG ...	VSE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, NSC, v6-5
413256	210	GTG ...	VTD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	NMD sORF	C2C12, E14, MEF, NSC, v6-5
1373567	99	CTG ...	LEN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF	E14, MEF
1139964	180	CTG ...	LRF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
419223	42	AAG ...	KQT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	C2C12
1147307	150	TTG ...	LLV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
412853	165	AAG ...	KTE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	C2C12
413232	36	AAG ...	KKS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	NMD sORF	C2C12
421340	180	ATT ...	ISW ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	C2C12
411894	144	GTG ...	VSW ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	C2C12, E14, MEF, v6-5
1137636	147	CTG ...	LVS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
1142228	66	GTG ...	VVP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	E14, v6-5
417524	75	AGG ...	RTN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	C2C12
411848	51	CTG ...	LTS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	NMD sORF	Brain, C2C12, E14, MEF, Neutrophil, NSC, v6-5

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