Transcript 411371

Transcript

ID CARD

MetamORF ID

411371

ENSMUST00000178605

Name

Galnt1-208

Strand

Biotype

protein_coding

Start-end positions

24232597-24286810

CDS Start-stop positions

24238347-24284856

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:14423

Aliases

ENSMUSG00000000420,
Galnt1, MGI:894693, NCBI:14423,
OFF:Galnt1

Chr 18

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
486392	45	TTG ...	LVS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
487015	57	GTG ...	VTG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1199777	57	ATT ...	ICD ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF Upstream	E14
487163	87	GTG ...	VNA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
399524	96	ATG ...	MLT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
802734	30	TTG ...	LHS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1198309	63	ATT ...	ICD ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF Upstream	E14
715212	39	GTG ...	VMT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1196668	33	TTG ...	LGR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
41077	63	ATG ...	MWI ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF Upstream	B_cell, C2C12, E14, Spleen_B_cell
486847	129	ATG ...	MVA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
396913	36	ATG ...	MTV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
394354	30	GTG ...	VSL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
393178	66	ATG ...	MRH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
411370	54	ATG ...	MNS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF Upstream	C2C12
715972	36	ATG ...	MTL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
487189	39	ATG ...	MTG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
1196423	66	ACG ...	TTF ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
486918	126	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
411467	69	ATG ...	MWI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF Upstream	C2C12, E14
486888	42	CTG ...	LSE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
715386	63	CTG ...	LEA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
486931	90	CTG ...	LFP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
394953	30	ATG ...	MEI ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
41120	48	ATG ...	MNS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF Upstream	C2C12, Spleen_B_cell

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