Transcript 411307

Transcript

ID CARD

MetamORF ID

411307

ENSMUST00000156318

Name

Prdx6-206

Strand

Biotype

processed_transcript

Start-end positions

161241635-161251121

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:11758

Aliases

1-Cys Prx,
1-cysPrx, 9430088D19Rik, AA690119,
aiPLA2, Aop2, Brp-12,
CP-3, ENSMUSG00000026701, GPx,
Ltw-4, Ltw4, Lvtw-4,
MGI:894320, NCBI:11758, NSGPx,
OFF:Prdx6, ORF06, Prdx5,
Prdx6

Chr 1

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
949888	30	AGG ...	RHK ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
13174	72	TTG ...	LDP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, v6-5
771196	36	ATG ...	MRF ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
77288	123	GTG ...	VCT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
997662	225	TTG ...	LQS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
8797	78	ATG ...	MIR ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, R1E, v6-5
26297	117	GTG ...	VMV ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
7713	195	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
11716	81	TTG ...	LGM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, v6-5
48009	249	CTG ...	LKL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, Neutrophil, NSC, R1E
960829	234	ATT ...	ILR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
11061	120	ATG ...	MVK ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, v6-5
934976	249	AGG ...	RNF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1005083	45	CTG ...	LQS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
930757	105	AAG ...	KGR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
937460	42	ATA ...	IDS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC
999193	54	TTG ...	LAE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
15143	81	TTG ...	LMI ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, v6-5
420269	33	ATC ...	IRF ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12
26013	129	TTG ...	LPF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, v6-5
45085	87	TTG ...	LLL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, v6-5
956565	105	ATG ...	MGH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
930283	279	CTG ...	LSI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
90771	57	TTG ...	LIA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
12479	129	ATG ...	MLT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, v6-5
15470	60	TTG ...	LPS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, v6-5
890555	42	GTG ...	VLY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
953802	285	CTG ...	LKL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
955359	225	GTG ...	VVD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
54593	90	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
14568	117	GTG ...	VKH ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, C2C12, R1E, v6-5
51446	243	CTG ...	LSI ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, NSC, R1E, v6-5

Export data