Transcript 411140

Transcript

ID CARD

MetamORF ID

411140

ENSMUST00000138296

Name

Tagln2-203

Strand

Biotype

retained_intron

Start-end positions

172500047-172505934

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:21346

Aliases

2700094C18Rik,
ENSMUSG00000026547, MGI:1312985, NCBI:21346,
OFF:Tagln2, Sm22a, Sm22B,
SM22beta, Tagln2

Chr 1

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
802408	105	CTG ...	LVM ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
420581	186	AAG ...	KQM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	C2C12
783535	132	TTG ...	LDC ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC
803873	99	ATG ...	MSS ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
419218	147	AGG ...	RCS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	C2C12
14956	69	GTG ...	VRT ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, v6-5
1037974	117	TTG ...	LSV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC
8778	39	GTG ...	VRT ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver, MEF, NSC, v6-5
14161	45	CTG ...	LAV ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver, MEF, NSC, v6-5
1078684	285	GTG ...	VQQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
439343	36	GTG ...	VRA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, v6-5
9627	132	TTG ...	LRS ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver, MEF, Neutrophil, NSC, v6-5
411139	273	ATT ...	IEK ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Intronic sORF	C2C12
411269	120	ACG ...	TTR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	C2C12
1036780	297	CTG ...	LSR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
418610	75	ATC ...	ITT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	C2C12
778345	111	GTG ...	VGL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC, v6-5
802281	33	GTG ...	VVC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
419489	267	AAG ...	KQY ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	C2C12
960592	84	AGG ...	RLR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1346273	72	CTG ...	LPA ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF
799925	120	ATG ...	MLS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, NSC
471628	42	GTG ...	VRS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Neutrophil
470593	51	CTG ...	LSC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, v6-5
937514	291	ATG ...	MQV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
473249	60	CTG ...	LQP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, v6-5

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