Transcript 409181

Transcript

ID CARD

MetamORF ID

409181

ENSMUST00000142085

Name

Otub1-205

Strand

Biotype

protein_coding

Start-end positions

7199711-7205775

CDS Start-stop positions

-7204419

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

NCBI:107260

Aliases

AI850305,
ENSMUSG00000024767, MGI:2147616, NCBI:107260,
OFF:Otub1, Otub1

Chr 19

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
43390	240	ATG ...	MMK ...	Ribo-seq	ATG		9	sORFs_org_Mouse	sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, v6-5
803827	165	CTG ...	LCR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	B_cell, Brain, MEF
42911	57	CTG ...	LMA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF	B_cell, E14, MEF, v6-5
403229	51	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	E14, MEF
43256	258	GTG ...	VLT ...	Ribo-seq	GTG		9	sORFs_org_Mouse	sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, v6-5
805354	168	TTG ...	LLC ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	B_cell, Brain, MEF
43352	270	CTG ...	LCC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	sORF	B_cell, Brain, E14, MEF
42407	54	ATG ...	MAT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	sORF	B_cell, E14, MEF, v6-5
43655	279	GTG ...	VGL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF	B_cell, Brain, E14, MEF
42411	48	ATG ...	MMK ...	Ribo-seq	ATG		9	sORFs_org_Mouse	sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, v6-5
42568	66	GTG ...	VLT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	sORF	B_cell, BMDC, E14, MEF, Neutrophil, v6-5
43731	273	TTG ...	LLC ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF	B_cell, Brain, E14, MEF
43686	258	ATG ...	MAT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	sORF	B_cell, BMDC, Brain, E14, MEF, NSC
42646	45	ATG ...	MKP ...	Ribo-seq	ATG		9	sORFs_org_Mouse	sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, v6-5

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