Transcript 40846 | MetamORF

Transcript

ID CARD

MetamORF ID

40846

ENSMUST00000051087

Name

Nrep-201

Strand

Biotype

protein_coding

Start-end positions

33437019-33463634

CDS Start-stop positions

33438714-33462023

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:27528

Aliases

AI325076,
D0H4S114, ENSMUSG00000042834, Harp,
MGI:99444, NCBI:27528, Nrep,
OFF:Nrep, P311, PTZ17,
SEZ17

Chr 18

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1197278	39	CTG ...	LKE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14
398123	54	ATG ...	MMP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
400332	45	GTG ...	VNR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF Upstream	Brain, E14, MEF
41047	252	GTG ...	VDL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	CDS sORF	Testis
41116	273	ATG ...	MRL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	CDS sORF	Testis
41041	216	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	CDS sORF	Testis
398757	126	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
396387	39	TTG ...	LHT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
41013	243	GTG ...	VWD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	CDS sORF	Testis
399487	72	TTG ...	LCF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF Upstream	Brain, MEF
398481	51	ATG ...	MPF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14
396911	30	GTG ...	VNR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF Upstream	Brain, MEF
400518	132	ATG ...	MCV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
40971	234	TTG ...	LNV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	CDS sORF	Testis
40845	228	GTG ...	VCA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	CDS sORF	Testis
1678707	36	TTG ...	LFP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
397976	54	CTG ...	LGQ ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
399574	63	TTG ...	LHT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
400056	120	TTG ...	LCL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
396273	57	TTG ...	LCF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF Upstream	Brain, MEF

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