Transcript 4073 | MetamORF

Transcript

ID CARD

MetamORF ID

4073

ENSMUST00000182227

Name

Sbsn-202

Strand

Biotype

protein_coding

Start-end positions

30751555-30756134

CDS Start-stop positions

30751562-30755988

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

NCBI:282619

Aliases

1110005D19Rik,
AI747508, ENSMUSG00000046056, MGI:2446326,
NCBI:282619, OFF:Sbsn, Sbsn

Chr 7

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4792	162	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream Overlapping sORF	MEF, Skin_tumor
5036	198	ATG ...	MRK ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative CDS sORF	3T3, MEF, Skin_tumor
4729	183	ATG ...	MVQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative CDS sORF	3T3, MEF, Skin_tumor
596564	42	CTG ...	LPG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
589665	48	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
4786	162	ATG ...	MIW ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative CDS sORF	3T3, MEF, Skin_tumor
4920	216	CTG ...	LVK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, MEF, Skin_tumor
4072	144	CTG ...	LRE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Skin_tumor
5026	213	GTG ...	VKR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, MEF, Skin_tumor
4865	171	GTG ...	VVV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative CDS sORF	3T3, MEF, Skin_tumor
4423	147	ATG ...	MLR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Skin_tumor
4674	156	TTG ...	LST ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream Overlapping sORF	MEF, Skin_tumor

Export data