Transcript 402601

Transcript

ID CARD

MetamORF ID

402601

ENSMUST00000168330

Name

Efemp2-213

Strand

Biotype

nonsense_mediated_decay

Start-end positions

5480123-5481659

CDS Start-stop positions

-5480647

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:58859

Aliases

0610011K11Rik,
Efemp2, ENSMUSG00000024909, Fbln4,
MBP1, MGI:1891209, NCBI:58859,
OFF:Efemp2

Chr 19

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
721154	105	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
1635477	105	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
1634645	120	GTG ...	VHT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
1635075	78	ATG ...	MGV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
1772932	99	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
722057	66	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
723550	63	GTG ...	VPT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
720768	102	CTG ...	LTC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
724256	111	GTG ...	VCL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
1158599	72	TTG ...	LSR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1633565	150	GTG ...	VPA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	MEF
1157413	57	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
724863	75	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
1773118	186	GTG ...	VHR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
1632820	36	CTG ...	LET ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
402600	33	GTG ...	VEP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, MEF, v6-5
408217	51	GTG ...	VDT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Brain, MEF, NSC
1633963	138	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
1635359	150	TTG ...	LAQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
1632872	129	GTG ...	VKQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
1773107	138	GTG ...	VFQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
1773143	93	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
720126	54	ATG ...	MPF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF

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