Transcript 4016 | MetamORF

Transcript

ID CARD

MetamORF ID

4016

ENSMUST00000209140

Name

Zfand6-209

Strand

Biotype

retained_intron

Start-end positions

84615583-84618698

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

NCBI:65098

Aliases

3110005P07Rik,
Awp1, ENSMUSG00000030629, MGI:1929510,
NCBI:65098, OFF:Zfand6, Za20d3,
Zfand6

Chr 7

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4312	30	GTG ...	VQE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Skin_tumor, v6-5
228879	117	TTG ...	LNA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell, v6-5
218014	39	CTG ...	LML ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
532915	114	GTG ...	VHR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell
217999	105	GTG ...	VEM ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, Spleen_B_cell, v6-5
221487	99	ATG ...	MFT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell, v6-5
224476	87	GTG ...	VCT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell
221050	78	ATG ...	MPV ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Spleen_B_cell, v6-5
221158	72	GTG ...	VWK ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Spleen_B_cell, v6-5
4015	39	CTG ...	LFH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Skin_tumor, v6-5
217738	69	ATG ...	MFT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
221869	90	GTG ...	VVC ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell, v6-5
222483	36	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1675135	57	TTG ...	LLV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1674069	54	TTG ...	LVK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
211561	33	CTG ...	LLR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
229151	57	CTG ...	LWC ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, Spleen_B_cell, v6-5

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