Transcript 401376

Transcript

ID CARD

MetamORF ID

401376

ENSMUST00000159243

Name

Ermp1-202

Strand

Biotype

retained_intron

Start-end positions

29627998-29648390

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:226090

Aliases

b2b2633Clo,
D19Ertd410e, D19Wsu12e, ENSMUSG00000046324,
Ermp1, Fxna, MGI:106250,
mKIAA1815, NCBI:226090, OFF:Ermp1

Chr 19

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
406924	159	TTG ...	LVQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver
403106	111	GTG ...	VAQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Spleen_B_cell
405389	99	CTG ...	LEP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
403428	141	GTG ...	VML ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain
42633	264	CTG ...	LTV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
403007	72	ATG ...	MGA ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
407424	150	TTG ...	LGG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
404623	75	TTG ...	LIR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
402945	54	CTG ...	LEA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
404332	114	GTG ...	VVA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Spleen_B_cell
406818	108	GTG ...	VVK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
401375	249	CTG ...	LCG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
407023	105	TTG ...	LRR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
42703	246	TTG ...	LEQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
405730	36	ATG ...	MVL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
14405	42	TTG ...	LAP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
403544	105	CTG ...	LTP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
407426	162	ATG ...	MRR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
41809	231	CTG ...	LIE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1157503	81	CTG ...	LCS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
408070	57	TTG ...	LKM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
402640	51	ATG ...	MDT ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain

Export data