Transcript 400982

Transcript

ID CARD

MetamORF ID

400982

ENSMUST00000065304

Name

Rtn3-202

Strand

Biotype

protein_coding

Start-end positions

7425901-7483289

CDS Start-stop positions

7427830-7483083

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:20168

Aliases

ENSMUSG00000024758,
MGI:1339970, NCBI:20168, OFF:Rtn3,
Rtn3, RTN3-A1

Chr 19

ORFs

58 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
962284	39	ATC ...	IRP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1500180	102	CTG ...	LES ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	NSC
402988	45	TTG ...	LEF ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
43617	159	TTG ...	LGL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, NSC
43707	282	GTG ...	VSV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, NSC
42847	282	CTG ...	LSE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14
42591	42	TTG ...	LSS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
1203532	81	ATA ...	ISL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
42955	45	ATG ...	MWT ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, R1E, v6-5
43030	45	ATG ...	MST ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
42337	63	CTG ...	LCR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
41677	105	CTG ...	LSP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
402335	39	GTG ...	VTG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
961411	114	AAG ...	KQS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
401398	66	CTG ...	LEE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
43449	90	CTG ...	LCR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
42160	144	CTG ...	LAR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
42905	33	GTG ...	VAD ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, R1E, v6-5
41790	36	ATG ...	MLV ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
43573	276	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, NSC
42028	57	CTG ...	LRW ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, R1E, v6-5
401620	66	ATG ...	MSK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
43506	174	GTG ...	VLS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
1204434	108	ATA ...	ISL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
405823	57	CTG ...	LDL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
402272	96	CTG ...	LRR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1204837	66	ATC ...	IHS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
43589	162	ATG ...	MLG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, NSC
43579	153	TTG ...	LPG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, NSC
43647	171	TTG ...	LTT ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC
406795	75	GTG ...	VHW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1203049	33	AGG ...	RTS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
41825	54	TTG ...	LGL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, R1E, v6-5
42392	60	ATG ...	MLR ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, R1E, v6-5
406886	42	TTG ...	LLH ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
43264	132	CTG ...	LSP ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
407852	102	TTG ...	LTE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
409935	84	CTG ...	LYI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
41308	57	ATG ...	MLG ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
42973	138	GTG ...	VWS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E, v6-5
43086	48	CTG ...	LPR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
405660	39	CTG ...	LYL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
400981	63	TTG ...	LFL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
43189	102	CTG ...	LSF ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
407988	63	TTG ...	LGS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
43392	273	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, NSC
41840	147	GTG ...	VLS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
402494	81	ATG ...	MKE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
41743	75	CTG ...	LSF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
42510	30	GTG ...	VLF ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, R1E, v6-5
42981	33	TTG ...	LVL ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, R1E, v6-5
42813	48	TTG ...	LPG ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, R1E, v6-5
963593	144	ATC ...	IRP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
403454	51	CTG ...	LIL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
43296	216	TTG ...	LSS ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
43220	165	GTG ...	VWS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
408664	90	GTG ...	VVL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
41365	66	TTG ...	LTT ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5

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