Transcript 399236

Transcript

ID CARD

MetamORF ID

399236

ENSMUST00000041314

Name

Paip2-201

Strand

Biotype

protein_coding

Start-end positions

35598617-35617186

CDS Start-stop positions

35610897-35616255

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:67869

Aliases

2310050K10Rik,
AU045972, ENSMUSG00000037058, MGI:1915119,
NCBI:67869, OFF:Paip2, Paip2

Chr 18

ORFs

54 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
484620	69	TTG ...	LAT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14, Spleen_B_cell
486842	96	CTG ...	LPV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, Neutrophil, Spleen_B_cell
958823	93	ATC ...	IRG ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
39521	120	CTG ...	LEK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14, MEF, Spleen_B_cell
959382	48	GTG ...	VHW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
400264	51	TTG ...	LQS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
40775	48	ATG ...	MTL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell
958772	51	AAG ...	KIQ ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
400097	42	ATG ...	MAL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
486570	60	TTG ...	LAT ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, MEF, Neutrophil, Spleen_B_cell
486768	39	GTG ...	VHW ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, MEF, Neutrophil, Spleen_B_cell
39466	66	CTG ...	LWR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil, Spleen_B_cell
13467	39	CTG ...	LFP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
486119	105	CTG ...	LPV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil, Spleen_B_cell
39616	153	TTG ...	LNA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
1200114	99	ATC ...	ISH ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1198402	39	ATT ...	IRW ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1196586	156	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1199853	192	AAG ...	KRS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1196366	150	AGG ...	RII ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
486636	90	GTG ...	VEI ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, Neutrophil, Spleen_B_cell
39650	30	ATG ...	MAL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
1196368	42	ACG ...	TST ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
13599	42	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
398859	45	GTG ...	VMA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
40974	60	ATG ...	MTL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell
399235	159	GTG ...	VFV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, Neutrophil, Spleen_B_cell
958356	168	ACG ...	TVI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1199478	129	AAG ...	KNM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
959318	33	ATC ...	IPM ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
396955	60	ATG ...	MVY ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
958172	147	AGG ...	RPT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	BMDC
1196915	48	ACG ...	TTT ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1199963	150	AAG ...	KKC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1196716	144	ATC ...	IHL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1199500	84	ATC ...	IRG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1199728	138	AAG ...	KRK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
39803	111	ATG ...	MNG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
39848	129	TTG ...	LFG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
399701	54	TTG ...	LLS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Neutrophil, Spleen_B_cell
485329	168	GTG ...	VFV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
400112	69	ATG ...	MKR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
958896	42	ACG ...	TLF ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1198813	162	ATT ...	ILM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
484686	99	GTG ...	VEI ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14, MEF, Neutrophil, Spleen_B_cell
40542	33	GTG ...	VMA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
1200188	174	AAG ...	KNL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
959880	81	ACG ...	TVI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1199469	63	AGG ...	RII ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1199674	57	ATC ...	IHL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
41131	123	ATG ...	MNG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Spleen_B_cell
1199834	75	ATT ...	ILM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
41034	165	TTG ...	LNA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
487165	126	TTG ...	LDW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell

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