Transcript 39923 | MetamORF

Transcript

ID CARD

MetamORF ID

39923

ENSMUST00000025486

Name

Lmnb1-201

Strand

Biotype

protein_coding

Start-end positions

56707813-56753424

CDS Start-stop positions

56708113-56752648

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:16906

Aliases

ENSMUSG00000024590,
Lmnb1, MGI:96795, NCBI:16906,
OFF:Lmnb1

Chr 18

ORFs

65 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
713168	75	CTG ...	LAS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
484890	222	TTG ...	LYL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Spleen_B_cell
484583	123	ATG ...	MRQ ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, R1E, Spleen_B_cell, v6-5
486882	216	ATG ...	MKL ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
484657	87	TTG ...	LMW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell, v6-5
1198955	282	AGG ...	RRC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1199339	168	AGG ...	RKQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
484833	90	TTG ...	LLR ...	Ribo-seq	TTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1197063	69	AGG ...	RRA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
486188	117	CTG ...	LRL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, MEF, Spleen_B_cell
1199165	108	AGG ...	RNW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1498933	33	ATG ...	MRC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
715739	84	CTG ...	LQM ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF
486539	237	TTG ...	LCG ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, Spleen_B_cell
1198775	48	ATC ...	ISV ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
485438	51	CTG ...	LIS ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
486509	54	CTG ...	LTE ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell, v6-5
485321	60	ATG ...	MST ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell
486183	99	CTG ...	LAS ...	Ribo-seq	CTG	strong	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
1154507	42	GTG ...	VGC ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1198416	261	ATC ...	IAA ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
957903	42	AAG ...	KIC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
486487	66	ATG ...	MPR ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
1200197	96	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
959089	84	AAG ...	KPF ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
484624	39	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell, v6-5
484494	66	GTG ...	VYT ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, Spleen_B_cell
1198111	99	AGG ...	RLG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
485347	42	GTG ...	VEP ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
1049492	30	TTG ...	LRM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
485728	120	GTG ...	VCA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, Spleen_B_cell, v6-5
959393	33	CTG ...	LEE ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
485048	84	ATG ...	MWR ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
485972	72	GTG ...	VCV ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, Spleen_B_cell
486572	168	CTG ...	LRT ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
484501	66	TTG ...	LSM ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, Spleen_B_cell
485423	57	GTG ...	VLA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, NSC, Spleen_B_cell, v6-5
1200137	225	AGG ...	RRC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1197480	51	ATA ...	IYL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1197091	39	ATA ...	ICA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1196682	102	AGG ...	RRK ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
485067	63	CTG ...	LCT ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell
1196468	51	ATA ...	IRC ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1197167	57	AGG ...	RNL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
485678	96	CTG ...	LGD ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
39922	105	ATG ...	MRP ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
485118	90	ATG ...	MKL ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1199044	78	ATG ...	MLA ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1198291	240	ACG ...	TRP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
485899	78	CTG ...	LRV ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, Spleen_B_cell
485469	45	CTG ...	LAG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Spleen_B_cell
1199812	195	ATT ...	IWR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1199730	183	ACG ...	TRP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
484646	42	GTG ...	VFG ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, Spleen_B_cell, v6-5
1199293	99	AGG ...	RTC ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
712983	48	TTG ...	LET ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E, v6-5
1199126	75	ACG ...	TTA ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1197718	78	AGG ...	RSR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1197040	66	ATC ...	ISQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1196441	93	AGG ...	RSC ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
801988	51	CTG ...	LTS ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Neutrophil, R1E, v6-5
485132	180	GTG ...	VVC ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, Spleen_B_cell
1199570	165	AGG ...	RTW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
485333	78	CTG ...	LGV ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, R1E, Spleen_B_cell, v6-5
801113	42	CTG ...	LRT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, v6-5

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