Transcript 39719 | MetamORF

Transcript

ID CARD

MetamORF ID

39719

ENSMUST00000173806

Name

Hspa9-204

Strand

Biotype

retained_intron

Start-end positions

34948172-34951573

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

NCBI:15526

Aliases

74kDa,
Csa, ENSMUSG00000024359, Grp75,
Hsc74, Hsp74, Hsp74a,
Hspa9, Hspa9a, MGI:96245,
Mortalin, Mot-2, Mot2,
Mthsp70, NCBI:15526, OFF:Hspa9,
Pbp74

Chr 18

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
397894	147	TTG ...	LPL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, E14, Liver, MEF, Neutrophil, R1E
1198379	51	AGG ...	RLM ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
40052	183	CTG ...	LEN ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, E14, Liver, MEF, Neutrophil, R1E, Testis
802858	228	GTG ...	VIS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Liver, MEF, Neutrophil
40283	63	ATG ...	MLG ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF, Neutrophil, R1E, Testis
397204	180	ATG ...	MLK ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, E14, Liver, MEF, Neutrophil, R1E
39984	147	GTG ...	VVA ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF, Neutrophil, R1E, Testis
484786	120	TTG ...	LLV ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver, MEF, R1E
40310	66	GTG ...	VML ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, E14, Liver, MEF, Neutrophil, R1E, Testis
484754	117	TTG ...	LVC ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	B_cell, Liver, MEF, Neutrophil, Spleen_B_cell
395722	93	CTG ...	LSP ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF, Neutrophil, R1E
800948	48	TTG ...	LDD ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
801443	36	ATG ...	MMT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
39718	69	ATG ...	MVM ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF, Neutrophil, R1E, Testis
1199008	84	ATC ...	IQT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
801424	231	GTG ...	VVI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Liver, MEF
1197496	45	ATT ...	IGR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
484970	84	TTG ...	LSV ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF, R1E
393442	153	CTG ...	LWL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF, Neutrophil, R1E
397518	171	GTG ...	VPE ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF, Neutrophil, R1E
1197013	54	AAG ...	KRL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
486318	66	ATG ...	MLL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Intronic sORF	B_cell, Liver, MEF
1199071	33	ATT ...	ILQ ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	E14
394199	132	ATG ...	MEN ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, E14, Liver, MEF, Neutrophil, R1E
395304	177	CTG ...	LKV ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF, Neutrophil
1199107	33	ATT ...	ITW ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
40792	78	GTG ...	VPP ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, MEF, Neutrophil, R1E, Testis
801876	33	ATG ...	MTL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
486410	99	ATG ...	MFL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver, MEF
1197693	117	AGG ...	RCQ ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1197628	69	ACG ...	TTC ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
485362	45	ATG ...	MEN ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, E14, Liver, MEF, R1E
802704	249	ATG ...	MVI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Liver, MEF
485254	54	TTG ...	LRL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, Liver, MEF, R1E

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