Metam
ORF

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Transcript

ID CARD

MetamORF ID

396

ID

ENSMUST00000000001

Name

Gnai3-201

Strand

-

Biotype

protein_coding

Start-end positions

108107280-108146146

CDS Start-stop positions

108109422-108146005

CDS Relative positions

-

Sequences

Transcript sequence

CAC ...

Gene

ID

NCBI:14679

Aliases

AI158965,
AW537698, ENSMUSG00000000001, Galphai3,
Gnai-3, Gnai3, MGI:95773,
NCBI:14679, OFF:Gnai3


Chr 3

ORFs

53 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1222538 45

AGG ...

RWP ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
538495 36

ATG ...

MVY ...

Ribo-seq
ATG moderate 8 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, NSC, v6-5
895222 45

ACG ...

TKR ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
413183 168

GTG ...

VCV ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3, C2C12, E14,
MEF, Neutrophil, Spleen_B_cell
54698 33

CTG ...

LLR ...

Ribo-seq
CTG moderate 12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, Testis,
v6-5
748254 39

CTG ...

LCH ...

Ribo-seq
CTG weak 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
v6-5
894461 48

ATA ...

ILF ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
505320 33

CTG ...

LLT ...

Ribo-seq
CTG weak 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, MEF, NSC,
Spleen_B_cell, v6-5
438 54

TTG ...

LIL ...

Ribo-seq
TTG 12 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Skin_tumor,
Spleen_B_cell, v6-5
505883 36

ATG ...

MLL ...

Ribo-seq
ATG weak 12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, Spleen_B_cell,
v6-5
1649941 72

GTG ...

VIT ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
139892 30

CTG ...

LEN ...

Ribo-seq
CTG strong 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, NSC,
R1E, Spleen_B_cell
504034 72

ATG ...

MAG ...

Ribo-seq
ATG 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, MEF,
Neutrophil, Spleen_B_cell, v6-5
1220238 75

AAG ...

KKR ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1223438 60

AGG ...

RHA ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
505392 87

TTG ...

LTA ...

Ribo-seq
TTG weak 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
Spleen_B_cell
1174168 39

ATG ...

MWA ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
v6-5
1218370 30

ATA ...

IRK ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
485 39

GTG ...

VIT ...

Ribo-seq
GTG 17 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, R1E, Skin_tumor,
Spleen_B_cell, Testis, v6-5
894273 114

AGG ...

RHC ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
502903 162

GTG ...

VSE ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3, B_cell, E14,
MEF, Spleen_B_cell
54447 69

ATG ...

MIW ...

Ribo-seq
ATG weak 18 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Glioma,
Liver, MEF, MESC,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis, v6-5
504343 45

TTG ...

LFL ...

Ribo-seq
TTG moderate 11 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
1222849 33

ATC ...

IRT ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1219018 93

AGG ...

RST ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
53826 60

TTG ...

LST ...

Ribo-seq
TTG weak 12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
NSC, Spleen_B_cell, Testis,
v6-5
894321 177

ATT ...

IPA ...

Ribo-seq
ATT 2 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC, E14
517 51

GTG ...

VWL ...

Ribo-seq
GTG 17 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
395 30

TTG ...

LIL ...

Ribo-seq
TTG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, Skin_tumor, Spleen_B_cell
1219132 60

AGG ...

RHA ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
54684 30

TTG ...

LQS ...

Ribo-seq
TTG weak 13 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, MEF, R1E,
Spleen_B_cell, Testis, v6-5
413176 228

ACG ...

TEK ...

Ribo-seq
ACG 2 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC, C2C12
52142 51

TTG ...

LWR ...

Ribo-seq
TTG 12 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5
54464 33

GTG ...

VCG ...

Ribo-seq
GTG weak 10 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, BMDC,
E14, MEF, Neutrophil,
R1E, Spleen_B_cell, Testis,
v6-5
489 54

TTG ...

LWR ...

Ribo-seq
TTG 18 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
894037 222

AAG ...

KAT ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC
54836 183

GTG ...

VAI ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3, E14, MEF,
Neutrophil, Spleen_B_cell, Testis,
v6-5
894794 105

AAG ...

KIP ...

Ribo-seq
AAG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
506019 45

ATG ...

MRT ...

Ribo-seq
ATG weak 12 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Glioma, Liver,
MEF, MESC, R1E,
Spleen_B_cell, v6-5
1218713 66

ATT ...

IWI ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
53166 72

GTG ...

VPQ ...

Ribo-seq
GTG weak 12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, Spleen_B_cell,
Testis, v6-5
52638 54

ATG ...

MCS ...

Ribo-seq
ATG moderate 15 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Glioma,
Liver, MEF, MESC,
Neutrophil, Spleen_B_cell, Testis,
v6-5
895218 33

AGG ...

RTR ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
893278 33

ATT ...

INN ...

Ribo-seq
ATT 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
504347 51

GTG ...

VAK ...

Ribo-seq
GTG moderate 13 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, v6-5
1218010 51

ATA ...

IHT ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
506192 231

CTG ...

LTE ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3, B_cell, E14,
Spleen_B_cell
1220902 129

AAG ...

KSE ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
54215 39

TTG ...

LML ...

Ribo-seq
TTG weak 12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, Spleen_B_cell, Testis,
v6-5
506295 117

CTG ...

LHV ...

Ribo-seq
CTG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, MEF, R1E,
Spleen_B_cell, v6-5
1646824 84

GTG ...

VWL ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
503768 33

ATG ...

MAR ...

Ribo-seq
ATG moderate 8 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Glioma, Liver, MEF,
MESC, Spleen_B_cell, v6-5
507632 72

ATG ...

MAG ...

Ribo-seq
ATG 12 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Glioma,
Liver, MEF, MESC,
Neutrophil, R1E, Spleen_B_cell,
v6-5

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5