Transcript 394179

Transcript

ID CARD

MetamORF ID

394179

ENSMUST00000150133

Name

Lman1-205

Strand

Biotype

processed_transcript

Start-end positions

65993591-66019778

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:70361

Aliases

2610020P13Rik,
AI326273, AU043785, C730041J05,
ENSMUSG00000041891, ERGIC53, F5F8D,
gp58, Lman1, MCFD1,
MGI:1917611, MR60, NCBI:70361,
OFF:Lman1, P58

Chr 18

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1413478	147	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1413740	150	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
486122	51	TTG ...	LVY ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	B_cell, v6-5
1198698	69	ATA ...	IRG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1198511	93	ACG ...	TAL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
486521	132	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
716121	60	ATG ...	MVL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
714490	99	GTG ...	VWT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, Liver, v6-5
716075	36	ATG ...	MDK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
394178	81	CTG ...	LCQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1198823	96	AAG ...	KWK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
715754	138	ATG ...	MAL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
397923	60	GTG ...	VEV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver
713215	81	TTG ...	LDQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
1154947	117	ATG ...	MIM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
980945	57	GTG ...	VLE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
714073	87	CTG ...	LCL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, v6-5
1196692	267	ATG ...	MGP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
484536	201	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Liver
802468	54	GTG ...	VTF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Liver
1413310	54	TTG ...	LEY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
713086	72	CTG ...	LIR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver

Export data