Transcript 393070

Transcript

ID CARD

MetamORF ID

393070

ENSMUST00000163205

Name

Csnk1a1-202

Strand

Biotype

protein_coding

Start-end positions

61555328-61582262

CDS Start-stop positions

61555751-61580492

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:93687

Aliases

2610208K14Rik,
4632404G05Rik, 5430427P18Rik, CK1a,
Csnk1a, Csnk1a1, ENSMUSG00000024576,
MGI:1934950, NCBI:93687, OFF:Csnk1a1

Chr 18

ORFs

61 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1362020	204	TTG ...	LVW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
13807	186	TTG ...	LGV ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
394524	240	GTG ...	VVA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	Brain
400456	60	GTG ...	VGL ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
40118	45	CTG ...	LPR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, NSC, Spleen_B_cell
398531	30	TTG ...	LRK ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
397132	147	CTG ...	LRC ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
398585	30	ATG ...	MGK ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
399005	51	ATG ...	MHI ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
958815	168	ACG ...	TNR ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
40036	42	GTG ...	VGC ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
40289	78	CTG ...	LQQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
1361257	210	TTG ...	LIL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
396964	30	ATG ...	MTT ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
39562	60	GTG ...	VEN ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
395384	237	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	Brain
1198848	99	AGG ...	RWG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
398098	42	TTG ...	LKT ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
1196967	156	ATC ...	ILF ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
958718	81	AGG ...	RQP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1199676	39	ATT ...	IPH ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1199807	90	ATA ...	IKT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
395271	93	TTG ...	LDD ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
40583	45	CTG ...	LPP ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	sORF Upstream	Brain, E14, MEF, Spleen_B_cell, v6-5
400431	72	GTG ...	VKR ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
1197867	30	ATC ...	IFR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
485093	210	TTG ...	LPA ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, NSC, Spleen_B_cell
40346	156	CTG ...	LAL ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, Spleen_B_cell
1198747	144	ATA ...	IKT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
399034	54	TTG ...	LAS ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
394547	54	ATG ...	MCI ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
40946	78	CTG ...	LAL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
393446	45	CTG ...	LFK ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
1197292	78	AGG ...	RPN ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
40657	36	GTG ...	VEQ ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, Spleen_B_cell
40530	57	ATG ...	MKR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
397578	66	GTG ...	VGR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Neutrophil
400085	105	CTG ...	LQQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
1199299	42	ATT ...	ICH ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
959658	75	ATA ...	IRF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1199473	171	ATA ...	ISY ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
393705	60	TTG ...	LNM ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
1196614	51	ATT ...	ITV ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
959529	90	ATA ...	IRF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
399834	150	TTG ...	LVW ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
393984	45	GTG ...	VKR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
40096	78	TTG ...	LGL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, NSC, Spleen_B_cell
1198764	60	ATC ...	ISW ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
398735	36	TTG ...	LSR ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
959921	93	AAG ...	KIK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
40416	36	GTG ...	VRP ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF Upstream	Brain, E14, Spleen_B_cell, v6-5
399522	84	ATG ...	MKR ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
1196713	30	ATT ...	IPH ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1196909	39	ATA ...	ICA ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
13904	156	TTG ...	LIL ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
1199114	51	AGG ...	RPK ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
41155	72	CTG ...	LPD ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
1197055	84	ATC ...	IWL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
399363	42	TTG ...	LVL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
1199867	54	AGG ...	RWG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1198924	48	ATA ...	IQR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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