Transcript 39294 | MetamORF

Transcript

ID CARD

MetamORF ID

39294

ENSMUST00000165706

Name

Pla2g7-203

Strand

Biotype

processed_transcript

Start-end positions

43568635-43589798

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:27226

Aliases

ENSMUSG00000023913,
MGI:1351327, NCBI:27226, OFF:Pla2g7,
PAF-AH, Pla2g7, R75400

Chr 17

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
38304	129	CTG ...	LSY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
36487	144	ATG ...	MLN ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain
1004078	39	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
705644	63	CTG ...	LTR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
39075	90	GTG ...	VLG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
1455497	42	ATG ...	MGP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1454621	51	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1454559	63	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
37876	81	GTG ...	VLG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
389545	90	CTG ...	LVA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
1454547	90	CTG ...	LVA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
391186	78	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
955873	39	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1005422	186	CTG ...	LQA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
39293	96	CTG ...	LQA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, NSC, R1E, Testis
389458	87	GTG ...	VAL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
1454904	54	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
391823	81	TTG ...	LLR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
1454825	45	CTG ...	LYA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC

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