Transcript 392606

Transcript

ID CARD

MetamORF ID

392606

ENSMUST00000142213

Name

Ercc3-203

Strand

Biotype

retained_intron

Start-end positions

32240354-32270151

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:13872

Aliases

BTF2 p89,
ENSMUSG00000024382, Ercc-3, Ercc3,
MGI:95414, NCBI:13872, OFF:Ercc3,
XPB

Chr 18

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1866324	138	CTG ...	LGH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
713854	42	CTG ...	LQP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
397508	162	CTG ...	LAE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver, Neutrophil, R1E
395670	186	CTG ...	LVA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E
396602	207	CTG ...	LLG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, R1E
392906	270	GTG ...	VSV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
716338	42	ATG ...	MSM ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Neutrophil
396888	81	GTG ...	VYM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
1629884	57	CTG ...	LSR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
397146	264	GTG ...	VEQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
393272	198	TTG ...	LTA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
396159	141	CTG ...	LLY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E
398049	138	TTG ...	LYT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil, R1E
393936	102	CTG ...	LSG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
1155463	123	GTG ...	VPD ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
957915	273	AAG ...	KKS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
397223	54	CTG ...	LCT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, Neutrophil, R1E
393648	93	CTG ...	LQT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, R1E
393128	204	CTG ...	LGS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, R1E
395584	78	CTG ...	LGN ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, MEF, R1E
394089	165	CTG ...	LLA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver, Neutrophil, R1E
392667	183	GTG ...	VAI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil, R1E
395336	96	CTG ...	LIK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
393646	168	GTG ...	VAI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
395066	198	CTG ...	LQK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver, Neutrophil, R1E
712696	36	ATG ...	MEQ ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Neutrophil
1154689	126	TTG ...	LVP ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
1629693	75	ATG ...	MHC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
393332	192	CTG ...	LCL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, MEF, R1E
1629950	48	ATG ...	MTS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
395931	147	ATG ...	MKR ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, MEF, R1E
396689	231	CTG ...	LTI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
398188	114	CTG ...	LGT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, R1E
398382	285	CTG ...	LGN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
397596	108	CTG ...	LKP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, R1E
397683	165	GTG ...	VCR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Neutrophil, R1E
958344	222	ATT ...	IPG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
392605	222	GTG ...	VQA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
394390	228	TTG ...	LEA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
398003	66	CTG ...	LRK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
1630380	36	ATG ...	MTL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1629529	30	TTG ...	LCR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF

Export data