Transcript 38986 | MetamORF

Transcript

ID CARD

MetamORF ID

38986

ENSMUST00000113669

Name

Znrd1-201

Strand

Biotype

protein_coding

Start-end positions

36954356-36958482

CDS Start-stop positions

36954528-36958284

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:66136

Aliases

1110014N07Rik,
ENSMUSG00000036315, MGI:1913386, NCBI:66136,
OFF:Znrd1, Rpa12, Znrd1

Chr 17

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
797759	39	TTG ...	LLS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	B_cell
484387	99	GTG ...	VAQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
1864376	246	TTG ...	LTG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	R1E
422178	36	CTG ...	LSE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	B_cell, Spleen_B_cell
383625	39	CTG ...	LWM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, Spleen_B_cell
388451	51	ATG ...	MWS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
39221	264	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	CDS sORF	Testis
389251	30	ATG ...	MRD ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
390483	78	CTG ...	LEF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
38990	285	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	CDS sORF	Testis
386039	93	CTG ...	LPR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
479414	30	TTG ...	LWL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell
390305	36	CTG ...	LWM ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver, Spleen_B_cell
39317	273	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	CDS sORF	Testis
480153	33	ATG ...	MRD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
383105	84	TTG ...	LWL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
38985	276	TTG ...	LLF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	CDS sORF	Brain, Testis
480053	39	ATG ...	MFA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell
383668	60	CTG ...	LPS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell

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