Transcript 388746

Transcript

ID CARD

MetamORF ID

388746

ENSMUST00000182147

Name

Birc6-205

Strand

Biotype

retained_intron

Start-end positions

74659146-74668813

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:12211

Aliases

A430032G04Rik,
A430040A19Rik, AA501170, Birc6,
Bruce, D630005A10Rik, ENSMUSG00000024073,
MGI:1276108, mKIAA1289, NCBI:12211,
OFF:Birc6

Chr 17

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
955760	33	GTG ...	VFG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
955116	48	ATC ...	ITH ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
1151950	234	CTG ...	LQS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1047129	42	CTG ...	LPM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, v6-5
955253	279	ACG ...	TSP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1152985	141	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
388745	132	TTG ...	LDE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
1150280	105	TTG ...	LHL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1151365	63	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1149820	213	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1151347	120	CTG ...	LEI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
954860	51	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
955223	237	ATT ...	ILQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
1358181	75	CTG ...	LSH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1151095	135	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1048057	120	TTG ...	LLE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, v6-5
1150722	159	TTG ...	LTT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1047862	117	CTG ...	LET ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, v6-5
955302	114	ATC ...	IGA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
1152090	177	TTG ...	LFS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
954712	288	GTG ...	VQA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC

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