Transcript 38865 | MetamORF

Transcript

ID CARD

MetamORF ID

38865

ENSMUST00000130946

Name

Hnrnpm-204

Strand

Biotype

protein_coding

Start-end positions

33646239-33660250

CDS Start-stop positions

33648854-

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:76936

Aliases

2610023M21Rik,
AA409009, ENSMUSG00000059208, Hnrnpm,
Hnrpm, MGI:1926465, mKIAA4193,
NCBI:76936, OFF:Hnrnpm

Chr 17

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
383316	39	GTG ...	VVW ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	BMDC
382631	51	GTG ...	VWL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
39125	114	ATG ...	MTL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Brain, R1E, Testis
482071	45	CTG ...	LSG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Spleen_B_cell
481489	45	TTG ...	LVV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
482532	159	GTG ...	VLY ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF	B_cell, BMDC, NSC, Spleen_B_cell
1195661	195	AAG ...	KML ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
392210	162	TTG ...	LFA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Brain
481651	156	CTG ...	LYA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	sORF	B_cell, BMDC, E14, NSC, Spleen_B_cell
478563	108	GTG ...	VVK ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	sORF	B_cell, BMDC, E14, NSC
1191819	30	ATT ...	IDV ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	sORF	E14
1192698	72	ACG ...	TES ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	sORF	E14
1196003	60	ATC ...	IRD ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14
384853	39	TTG ...	LSL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	sORF	B_cell, E14, NSC
1193324	102	ACG ...	TCC ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF	E14
1195466	180	AAG ...	KFN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1194419	93	ACG ...	TPT ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	sORF	E14
1191311	102	AAG ...	KFE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14
711571	153	TTG ...	LTF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Brain
1195046	186	AAG ...	KDK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1190480	126	AAG ...	KSK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14
38864	144	TTG ...	LPD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	R1E, Testis
1191949	60	AGG ...	RGA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	E14
12831	45	CTG ...	LPD ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF	B_cell, E14, NSC
1190893	48	AAG ...	KLS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14
385619	30	ATG ...	MED ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	sORF	B_cell, BMDC, E14, Spleen_B_cell
480306	84	GTG ...	VAE ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	sORF	B_cell, BMDC, NSC, Spleen_B_cell
39204	132	GTG ...	VSR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	R1E, Testis

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