Transcript 38838 | MetamORF

Transcript

ID CARD

MetamORF ID

38838

ENSMUST00000176237

Name

Traf7-208

Strand

Biotype

protein_coding

Start-end positions

24512247-24527863

CDS Start-stop positions

-24519208

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:224619

Aliases

ENSMUSG00000052752,
MGI:3042141, NCBI:224619, OFF:Traf7,
RFWD1, Traf7

Chr 17

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1153523	165	TTG ...	LGL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	v6-5
37129	54	ATG ...	MMP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	E14, MEF, NSC, Spleen_B_cell
39042	72	GTG ...	VGE ...	Ribo-seq	GTG		11	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
38837	81	ATG ...	MMP ...	Ribo-seq	ATG		12	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
387078	96	CTG ...	LMG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	E14, MEF, v6-5
479220	57	GTG ...	VSC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF
36618	45	GTG ...	VGE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	sORF	E14, MEF, NSC, Spleen_B_cell
799712	126	CTG ...	LMG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	v6-5
36537	51	ATG ...	MPV ...	Ribo-seq	ATG		6	sORFs_org_Mouse	sORF	E14, MEF, NSC, Spleen_B_cell
1153587	123	ATG ...	MGL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	v6-5
380895	93	ATG ...	MGL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	E14, MEF, v6-5
1625156	36	CTG ...	LPK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
480966	54	CTG ...	LKP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
384595	87	CTG ...	LAH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	E14, v6-5
39098	78	ATG ...	MPV ...	Ribo-seq	ATG		11	sORFs_org_Mouse	sORF	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5

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