Transcript 387 | MetamORF

Transcript

ID CARD

MetamORF ID

387

ENSMUST00000154148

Name

Gm37240-203

Strand

Biotype

protein_coding

Start-end positions

84496426-85887516

CDS Start-stop positions

84497736-84527733

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

Gm37240

Aliases

Gm37240

Chr 3

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1650018	54	TTG ...	LAR ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
141988	129	CTG ...	LDL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	Brain, MEF
140112	39	CTG ...	LPT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
386	30	ATG ...	MRT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Skin_tumor
1172753	48	ATG ...	MER ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
436	54	ATG ...	MKM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Skin_tumor
128569	42	GTG ...	VAK ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	B_cell, Brain
895411	75	AAG ...	KRG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF Upstream	BMDC
535718	78	TTG ...	LSS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1506808	78	ATG ...	MAL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	NSC
142655	87	TTG ...	LTV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	Brain
894970	60	AAG ...	KRG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
143632	63	CTG ...	LKQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	Brain
144091	123	TTG ...	LDS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF Upstream	Brain, MEF
53476	42	TTG ...	LLP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
17158	39	TTG ...	LNM ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Skin_tumor
541349	138	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	3T3
748182	39	CTG ...	LWT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1173848	33	TTG ...	LGP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
16639	33	ATG ...	MMR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Skin_tumor
144068	93	ATG ...	MAL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF Upstream	Brain
972321	30	AGG ...	RPW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
542	48	ATG ...	MPE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Skin_tumor
128027	30	TTG ...	LNL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
537795	51	GTG ...	VAQ ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
144121	63	TTG ...	LLE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF

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