Transcript 38666 | MetamORF

Transcript

ID CARD

MetamORF ID

38666

ENSMUST00000127423

Name

Mtch1-203

Strand

Biotype

processed_transcript

Start-end positions

29332114-29334005

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:56462

Aliases

2310034O17Rik,
AI255158, AU018396, C77849,
ENSMUSG00000024012, MGI:1929261, Mtch1,
NCBI:56462, OFF:Mtch1, PSAP

Chr 17

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
39013	201	CTG ...	LTY ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
38850	210	GTG ...	VSM ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1195789	90	AAG ...	KYL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
38665	117	GTG ...	VFK ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, Testis, v6-5
39119	147	CTG ...	LRA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, NSC, Testis, v6-5
1357628	81	ATG ...	MFS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
1005085	33	GTG ...	VSS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF
38906	162	GTG ...	VNN ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, Testis, v6-5
39399	84	CTG ...	LSV ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, NSC, Testis, v6-5
1191181	36	AGG ...	RPW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
39188	186	CTG ...	LLV ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1004361	48	CTG ...	LLF ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, v6-5
381726	39	CTG ...	LCS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
38889	78	GTG ...	VQG ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Testis, v6-5
1359383	93	ATG ...	MSE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
388482	60	CTG ...	LDS ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, Spleen_B_cell
1190200	78	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14

Export data