Transcript 38649 | MetamORF

Transcript

ID CARD

MetamORF ID

38649

ENSMUST00000149989

Name

Yipf3-205

Strand

Biotype

processed_transcript

Start-end positions

46251341-46252017

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:28064

Aliases

C6orf109,
D17Wsu94e, ENSMUSG00000071074, KLIP1,
MGI:106280, NCBI:28064, OFF:Yipf3,
Yipf3

Chr 17

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
391091	156	GTG ...	VEG ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Neutrophil, Spleen_B_cell
38651	231	CTG ...	LLL ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Neutrophil, Spleen_B_cell, Testis
36830	63	CTG ...	LPV ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain
38648	228	CTG ...	LLC ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Neutrophil, Spleen_B_cell, Testis
37530	81	GTG ...	VLP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain
38941	267	GTG ...	VLV ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Neutrophil, Spleen_B_cell, Testis
38958	249	GTG ...	VGP ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Neutrophil, Spleen_B_cell, Testis
39369	204	CTG ...	LHM ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Neutrophil, Spleen_B_cell, Testis
38029	135	CTG ...	LEG ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain
39411	180	CTG ...	LHF ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Neutrophil, Spleen_B_cell, Testis
38904	189	CTG ...	LLY ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Neutrophil, Spleen_B_cell, Testis
39142	273	GTG ...	VAV ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Neutrophil, Spleen_B_cell, Testis
39375	264	TTG ...	LVS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Neutrophil, Spleen_B_cell, Testis
37380	51	GTG ...	VIN ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain
391046	159	GTG ...	VVE ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Neutrophil, Spleen_B_cell
1454600	36	CTG ...	LCS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
38181	144	CTG ...	LDT ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14
38995	261	GTG ...	VSR ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Neutrophil, Spleen_B_cell, Testis
38973	213	CTG ...	LAA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Neutrophil, Spleen_B_cell, Testis

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