Transcript 382385

Transcript

ID CARD

MetamORF ID

382385

ENSMUST00000024857

Name

Lbh-201

Strand

Biotype

protein_coding

Start-end positions

72918305-72941942

CDS Start-stop positions

72918553-72939444

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:77889

Aliases

1810009F10Rik,
6720416L16Rik, ENSMUSG00000024063, Lbh,
MGI:1925139, NCBI:77889, OFF:Lbh

Chr 17

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
382384	48	CTG ...	LQA ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Spleen_B_cell
1497038	57	TTG ...	LFC ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF Upstream	MEF, NSC
1497073	120	TTG ...	LFC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	NSC
386607	51	TTG ...	LLQ ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Spleen_B_cell
1677521	69	TTG ...	LFV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF Upstream	MEF
478553	192	CTG ...	LKG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, NSC, Spleen_B_cell
481559	45	CTG ...	LLS ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, MEF, NSC, Spleen_B_cell, v6-5
1496253	132	CTG ...	LPA ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	MEF, NSC
1625808	30	ATG ...	MEP ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
484276	60	ATG ...	MAF ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
484293	81	TTG ...	LVS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, Spleen_B_cell
482695	57	CTG ...	LHC ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	B_cell, NSC, Spleen_B_cell
411127	132	TTG ...	LVC ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, NSC
1497537	183	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	NSC
1496990	84	GTG ...	VTG ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF Upstream	MEF, NSC
956929	246	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF
1625631	87	GTG ...	VGQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
702895	42	TTG ...	LFF ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, MEF, Neutrophil, NSC, v6-5
483841	36	CTG ...	LYI ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, NSC, Spleen_B_cell, v6-5
411303	102	ACG ...	TLH ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
481810	78	GTG ...	VES ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, NSC, Spleen_B_cell

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