Transcript 381867

Transcript

ID CARD

MetamORF ID

381867

ENSMUST00000170858

Name

Agpat4-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

12151772-12219079

CDS Start-stop positions

12151772-12210655

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:68262

Aliases

1500003P24Rik,
Agpat4, ENSMUSG00000023827, MGI:1915512,
NCBI:68262, OFF:Agpat4

Chr 17

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
381898	72	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
1004083	69	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
1005157	39	GTG ...	VKC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
1004560	93	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14
387474	69	CTG ...	LAH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
381866	168	CTG ...	LIH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain
1004189	111	GTG ...	VAQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
387584	36	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
386816	60	TTG ...	LRL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF
1862993	195	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
383077	30	TTG ...	LRD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
479146	66	GTG ...	VTE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	Spleen_B_cell
381176	51	ATG ...	MRT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Spleen_B_cell
1860959	105	CTG ...	LVI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
799280	45	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
480332	51	CTG ...	LGV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, R1E, Spleen_B_cell
1861389	153	GTG ...	VFI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
796719	96	GTG ...	VVG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
708243	39	TTG ...	LQE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1861795	192	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
1862411	168	CTG ...	LVF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
379223	54	TTG ...	LTF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF
795739	99	GTG ...	VVV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell
385026	147	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
383150	42	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
481191	54	CTG ...	LLG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, R1E, Spleen_B_cell
797397	114	CTG ...	LCT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, R1E
796529	81	GTG ...	VYH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell

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