Transcript 3772 | MetamORF

Transcript

ID CARD

MetamORF ID

3772

ENSMUST00000127210

Name

Actn4-202

Strand

Biotype

protein_coding

Start-end positions

28898620-28962223

CDS Start-stop positions

-28962183

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:60595

Aliases

Actn4,
C77391, ENSMUSG00000054808, MGI:1890773,
NCBI:60595, OFF:Actn4

Chr 7

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3771	123	ATG ...	MKS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	MEF, Neutrophil, Skin_tumor
4147	51	GTG ...	VQL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	MEF, Skin_tumor
424773	138	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	E14
594282	51	CTG ...	LDH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	Brain, E14, MEF, NSC
4943	108	GTG ...	VCR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF	Brain, E14, MEF, NSC, Skin_tumor, v6-5
1253077	300	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
598290	54	ATG ...	MDG ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	sORF	MEF, Neutrophil
233595	231	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
1577034	174	GTG ...	VPW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
594211	33	ATG ...	MHS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	Neutrophil
4576	54	CTG ...	LVQ ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF	MEF, Skin_tumor
4649	192	CTG ...	LFL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF	E14, MEF, Neutrophil, Skin_tumor, v6-5
911896	99	TTG ...	LTT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	BMDC

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