Transcript 377189

Transcript

ID CARD

MetamORF ID

377189

ENSMUST00000023462

Name

Mapk1-201

Strand

Biotype

protein_coding

Start-end positions

16983382-17044749

CDS Start-stop positions

16983627-17038430

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:26413

Aliases

9030612K14Rik,
AA407128, AU018647, C78273,
ENSMUSG00000063358, ERK, Erk2,
Mapk1, MAPK2, MGI:1346858,
NCBI:26413, OFF:Mapk1, p41mapk,
p42mapk, Prkm1, PRKM2

Chr 16

ORFs

52 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34099	66	TTG ...	LKL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver
1186486	36	AAG ...	KRD ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1189331	102	ACG ...	TAW ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
953532	276	TTG ...	LNR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, MEF, NSC, v6-5
377188	216	TTG ...	LLK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF
952739	30	ATA ...	IQI ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
1187592	111	ATA ...	IRC ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
33669	69	GTG ...	VQP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14
1185676	60	ATC ...	IAG ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
378438	72	GTG ...	VIS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
34652	57	CTG ...	LLD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Brain
1186091	66	ACG ...	TLV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
372288	57	TTG ...	LLS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
375021	54	CTG ...	LLF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
952030	84	ATA ...	IFG ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
372039	36	ATG ...	MTT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
476492	87	CTG ...	LCC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14
695197	33	TTG ...	LST ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
1188038	93	AGG ...	RVL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1185976	81	ACG ...	TAW ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1188098	39	ACG ...	TGG ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
375400	36	ATG ...	MTS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
369140	51	TTG ...	LAL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
371890	45	TTG ...	LPV ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver
375678	72	TTG ...	LVC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
12155	117	TTG ...	LTW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain
952365	78	ATA ...	IIS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
951186	57	ATA ...	ISI ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
952457	48	ATC ...	ISI ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
372032	45	TTG ...	LAS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
1186799	39	ATC ...	IQQ ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1624715	195	TTG ...	LTW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
12223	138	TTG ...	LLK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain
1149201	282	TTG ...	LKL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, NSC, v6-5
33484	60	TTG ...	LNR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver
1623943	213	CTG ...	LKR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
374999	39	GTG ...	VLQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, Spleen_B_cell
12451	51	CTG ...	LSK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
372735	60	CTG ...	LHP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
1187991	135	ATT ...	ICF ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
373795	75	CTG ...	LWA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
373670	36	TTG ...	LQI ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, Spleen_B_cell
951880	102	ACG ...	TTY ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
12471	66	TTG ...	LKR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
12253	135	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3
953239	66	AAG ...	KFE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
372167	81	ATG ...	MII ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
369453	57	ATG ...	MRT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, Spleen_B_cell
375793	57	GTG ...	VTL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
952400	42	ACG ...	TFC ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
373456	87	CTG ...	LLM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
370563	87	TTG ...	LIF ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver

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