Transcript 37619 | MetamORF

Transcript

ID CARD

MetamORF ID

37619

ENSMUST00000170759

Name

Gpatch11-201

Strand

Biotype

protein_coding

Start-end positions

78835516-78848299

CDS Start-stop positions

78837844-78845199

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:53951

Aliases

2310002B06Rik,
C80922, Ccdc75, ENSMUSG00000050668,
Gpatch11, L26697, MGI:1858435,
NCBI:53951, OFF:Gpatch11

Chr 17

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1194615	171	GTG ...	VQV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	E14
37618	48	GTG ...	VRA ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, R1E, Testis
957317	84	AAG ...	KLA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
712242	39	ATG ...	MKQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
1625567	60	TTG ...	LSD ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
954445	36	ATA ...	ICR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
957705	60	ATA ...	ICR ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
702635	48	CTG ...	LLE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF
385975	72	ATG ...	MHS ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, R1E
702996	81	TTG ...	LSL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF Upstream	3T3, E14
386920	54	GTG ...	VEL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	BMDC, Brain
1194265	42	AGG ...	RTI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1195178	66	AGG ...	RTI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
705066	60	GTG ...	VKT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, R1E
701012	63	GTG ...	VLS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, MEF
37621	30	ATG ...	MTE ...	Ribo-seq	ATG	moderate	17	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Testis, v6-5
707159	30	ATG ...	MKM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
708994	45	CTG ...	LES ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3

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