Transcript 37345 | MetamORF

Transcript

ID CARD

MetamORF ID

37345

ENSMUST00000161299

Name

Lrpprc-205

Strand

Biotype

retained_intron

Start-end positions

84767589-84790562

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:72416

Aliases

3110001K13Rik,
C76645, ENSMUSG00000024120, Gp130,
Lrp130, Lrpprc, Lsfc,
MGI:1919666, NCBI:72416, OFF:Lrpprc

Chr 17

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
482023	90	CTG ...	LSL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Spleen_B_cell
480839	84	CTG ...	LRL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
385283	129	GTG ...	VRK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
479908	54	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell
38234	75	CTG ...	LHS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil
481547	141	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
380991	96	CTG ...	LMR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
480169	48	CTG ...	LAV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
37590	60	CTG ...	LQF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil, Spleen_B_cell
387715	87	CTG ...	LDN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
37404	195	CTG ...	LSQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
37281	180	TTG ...	LYA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
479384	144	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Spleen_B_cell
37042	90	CTG ...	LRD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
480338	123	CTG ...	LLG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
37344	48	CTG ...	LHC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil, Testis
36876	111	CTG ...	LID ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell

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