Transcript 37333 | MetamORF

Transcript

ID CARD

MetamORF ID

37333

ENSMUST00000040440

Name

Calm2-201

Strand

Biotype

protein_coding

Start-end positions

87433412-87446935

CDS Start-stop positions

87434027-87446795

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:12314

Aliases

1500001E21Rik,
AL024017, Calm2, Cam2,
CamC, ENSMUSG00000036438, MGI:103250,
NCBI:12314, OFF:Calm2

Chr 17

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
39117	69	CTG ...	LKS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Testis
38294	111	GTG ...	VFM ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell, Brain, Testis, v6-5
38835	51	CTG ...	LVA ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, C2C12, E14, MEF, NSC, Testis, v6-5
38433	42	CTG ...	LVA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, Brain, MEF, Testis
1625961	33	ATG ...	MLH ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
39289	114	ATG ...	MRS ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	B_cell, Brain, Glioma, Liver, MEF, MESC, Testis
37351	45	GTG ...	VKK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
38922	120	GTG ...	VFM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Testis
37332	51	GTG ...	VER ...	Ribo-seq	GTG	moderate	13	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
39092	57	TTG ...	LQS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Testis
37528	105	ATG ...	MRS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell, Brain, Testis, v6-5

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