Transcript 3713 | MetamORF

Transcript

ID CARD

MetamORF ID

3713

ENSMUST00000206681

Name

Il4ra-204

Strand

Biotype

retained_intron

Start-end positions

125552271-125572280

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:16190

Aliases

CD124,
ENSMUSG00000030748, Il4r, Il4ra,
MGI:105367, NCBI:16190, OFF:Il4ra

Chr 7

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1474484	174	GTG ...	VGA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
422346	69	CTG ...	LAS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
1474281	171	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1440886	147	CTG ...	LSF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1474710	36	TTG ...	LLE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
423645	75	CTG ...	LDS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, MEF, Spleen_B_cell
531883	51	TTG ...	LDL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
593541	168	GTG ...	VTY ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
422876	42	CTG ...	LWT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
1474023	177	GTG ...	VVG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
422746	63	GTG ...	VSG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
423181	132	CTG ...	LGE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Spleen_B_cell
424032	57	CTG ...	LIL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
423916	87	CTG ...	LTT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1473971	168	TTG ...	LTF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
423525	108	CTG ...	LAG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
1440020	126	CTG ...	LMS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
4296	63	TTG ...	LHQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
1473309	135	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
533740	99	CTG ...	LDF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
1441077	96	GTG ...	VRV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
3712	36	CTG ...	LSD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Skin_tumor
534178	39	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
534555	129	CTG ...	LQG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
534883	105	GTG ...	VSP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
597048	63	GTG ...	VDC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
1473634	144	CTG ...	LAV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
4441	33	TTG ...	LLG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Skin_tumor
535349	84	CTG ...	LRR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC

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