Transcript 3704 | MetamORF

Transcript

ID CARD

MetamORF ID

3704

ENSMUST00000032779

Name

Ctsc-201

Strand

Biotype

protein_coding

Start-end positions

88278085-88310888

CDS Start-stop positions

88278203-88309902

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:13032

Aliases

AI047818,
CatC, Ctsc, DPP1,
DPPI, ENSMUSG00000030560, MGI:109553,
NCBI:13032, OFF:Ctsc

Chr 7

ORFs

85 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
877809	33	GTG ...	VVS ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, v6-5
916129	78	ATT ...	INQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
911562	96	ATT ...	ILH ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
531499	66	TTG ...	LPL ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, NSC, Spleen_B_cell
534957	123	CTG ...	LLL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, Neutrophil, NSC, Spleen_B_cell
911589	75	ATT ...	INQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
841621	45	ATG ...	MLA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
844178	36	CTG ...	LKD ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver
423039	42	CTG ...	LGL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
913128	33	ATA ...	ILD ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
911757	75	AAG ...	KLL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
218165	54	GTG ...	VAT ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, Liver
844893	33	CTG ...	LQL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
3703	30	CTG ...	LDY ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Skin_tumor
423543	225	GTG ...	VVF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
4461	48	ATG ...	MLF ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, Skin_tumor, Spleen_B_cell, v6-5
4544	90	CTG ...	LPT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver
423655	222	GTG ...	VFQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Liver
533913	183	ATG ...	MVD ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Neutrophil, Spleen_B_cell
912756	42	TTG ...	LRF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
533943	162	TTG ...	LQG ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, Neutrophil, Spleen_B_cell
532534	180	GTG ...	VDS ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Neutrophil, Spleen_B_cell
913011	57	AAG ...	KAS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
915449	42	ATC ...	ILG ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
4560	45	CTG ...	LFC ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, v6-5
843763	45	TTG ...	LLA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver
531913	186	GTG ...	VMV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Neutrophil, Spleen_B_cell
916607	57	AAG ...	KEK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
424247	33	CTG ...	LEK ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell, v6-5
4485	36	TTG ...	LWA ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, v6-5
532404	72	ATG ...	MCW ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver, Spleen_B_cell
533636	72	CTG ...	LLS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, NSC, Spleen_B_cell
531075	39	TTG ...	LGL ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, Spleen_B_cell, v6-5
423017	150	ATG ...	MPK ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, Neutrophil, Spleen_B_cell, v6-5
840252	30	TTG ...	LEV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
911691	51	ATC ...	IML ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
912721	57	ATA ...	IGH ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
913626	57	ATT ...	ILL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
534991	207	TTG ...	LLS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Liver
914062	57	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
916294	63	ATC ...	ILE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
877090	39	ATG ...	MWV ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, Neutrophil, v6-5
532477	198	CTG ...	LPS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Liver
423889	42	ATG ...	MQH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Spleen_B_cell
426358	135	TTG ...	LWK ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, Neutrophil, Spleen_B_cell, v6-5
534977	42	ATG ...	MQT ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
534386	48	ATG ...	MKS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, Spleen_B_cell
915254	129	ATT ...	IPI ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
533248	138	TTG ...	LGW ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, Neutrophil, Spleen_B_cell
912245	42	ATT ...	ILP ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
425482	72	ATG ...	MQH ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Glioma, Liver, MEF, MESC, Spleen_B_cell
422547	81	ATG ...	MDP ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell
916544	51	AGT ...	SMK ...	Ribo-seq	AGT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
535183	75	ATG ...	MMC ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC, Spleen_B_cell
422479	213	TTG ...	LNL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Liver
843069	36	CTG ...	LFE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
915590	51	ATT ...	IPG ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
426367	126	CTG ...	LLL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, Neutrophil, NSC, Spleen_B_cell, v6-5
844478	42	TTG ...	LAR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver
913846	33	ATC ...	ILE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
424608	87	CTG ...	LGG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Liver, Spleen_B_cell
911823	57	AAG ...	KST ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
423091	60	TTG ...	LKS ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, NSC, Spleen_B_cell
224246	45	CTG ...	LHR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
425794	45	GTG ...	VAT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
422380	39	GTG ...	VEA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, Spleen_B_cell
912752	66	ACG ...	TTS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
911599	126	AAG ...	KKA ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
423871	51	CTG ...	LTT ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, Neutrophil, Spleen_B_cell, v6-5
879688	78	ATG ...	MTT ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC
531881	36	TTG ...	LLC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
913405	63	AGG ...	RPS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
880036	63	TTG ...	LRF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
912381	51	ACG ...	TMT ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
4077	72	CTG ...	LPT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
533264	132	TTG ...	LWK ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, Neutrophil, Spleen_B_cell, v6-5
218817	93	CTG ...	LDP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
913867	57	AAG ...	KRS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
3791	96	TTG ...	LSW ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, NSC, Skin_tumor, Spleen_B_cell
914359	54	ATA ...	IPF ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
531296	273	TTG ...	LGI ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Spleen_B_cell
531539	42	CTG ...	LGG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell, v6-5
426724	60	TTG ...	LEV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, Spleen_B_cell
424615	48	ATG ...	MTS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, NSC, Spleen_B_cell
3677	72	CTG ...	LIC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver

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